Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq863 93.3 6e-14 seq3251 84.2 3e-11 >seq863 Length=2839217 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | ||||| || | |||||| || || || ||||| |||| Sbjct 2111638 TTCCACCACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTG 2111579 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| |||| || ||| || | | ||| |||||||| |||| | |||||||| || | Sbjct 2111578 CAAGGGTTCGGCCATCCTCGAGCTATTTACCAGCAAAGATCAGACGCTGCTGATCTGGGG 2111519 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||||||||| Sbjct 2111518 GAATTCCTTCTTTATCTTG 2111500 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || | ||||| || || ||||| ||||| | ||| || || | |||||| Sbjct 2112530 ACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCATCA 2112471 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || || ||||| ||||| |||||||| ||||||||||| ||||| ||||| || Sbjct 2112470 AGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTATCCTG 2112412 >seq3251 Length=7052893 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| | |||||| || || || ||||| |||| |||||| | || ||| || Sbjct 3480957 ACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCAAGAGTCCGGCCATCCTCA 3481016 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || ||||||||||| | || ||||| ||||| || || ||||||||||| || Sbjct 3481017 AGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGGTCCGGTGGGATCCCTTCTTTATCCTG 3481075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743494000837120