Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1371 125 7e-24 >seq1371 Length=8752182 Score = 125 bits (138), Expect = 7e-24 Identities = 578/901 (64%), Gaps = 32/901 (4%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 |||||||||| || ||| ||||| || | ||||||||| ||||||||||| || || | Sbjct 1699876 TTGACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCC 1699935 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAA--TAGTATTTATC 16044 ||| | || || ||||| |||| || || || | |||| || || || Sbjct 1699936 CTTGAAGAGAGATCAACTCCATCCAATCGAACGGGTTCT--GAACTCCGTAAACCTTTTC 1699993 Query 16045 GCATCCCAATTCCAAC-AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAAT 16103 || ||||| | || | || | ||||| || ||||| || || ||||| |||| | | Sbjct 1699994 ACA-CCCAAGTGCAGCCAACAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCT 1700052 Query 16104 CACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATAT 16163 |||||||||| || | | || || || | || || |||| || | | || || | Sbjct 1700053 CACAGTTCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTT 1700112 Query 16164 TAACCGCTTCAATGATTATATCTCTTACTACACTATTTA-ACGGAGGGT-TTAATAAGTG 16221 || || || | | ||| | | | | || | | | || || | || | ||| Sbjct 1700113 CGACTGCATCCTTAACTAT--CCCCTGC-ACCTTCTCAACACTCAGCTTCTTCTTCAGT- 1700168 Query 16222 TTTAAACATTATA-----CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || | |||| || ||||||||||| || | |||||||| | ||| | | Sbjct 1700169 ---AAGCTGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGC 1700225 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATAT--AGCGG 16334 ||||| || || || | |||||||| | || || ||||| | ||| || || ||| | Sbjct 1700226 TCGTTCGAGAAGGTTAATCCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAG 1700285 Query 16335 CAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGT 16394 || | ||||| ||||| || |||||||| ||||| |||| || | |||| | Sbjct 1700286 AAACT--TCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAA 1700343 Query 16395 ACGTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGT 16454 ||| | | || || ||||| |||||||| || || | |||||||| Sbjct 1700344 ACGAT---TCAGCACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAG 1700400 Query 16455 TCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTAT 16514 || | || |||||| ||| | || |||| || |||| || ||||| | Sbjct 1700401 GGATAGTTTCAATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTT 1700460 Query 16515 CTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-A 16573 ||| || | | |||||||| || ||||| || || || || || || || ||||| | Sbjct 1700461 CTAAAAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGA 1700520 Query 16574 AAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTA 16633 |||| | |||||| | | || || || || ||| | || | || ||| | Sbjct 1700521 AAGC-GCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGA 1700579 Query 16634 ACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT-- 16691 || || || || || || || || || || ||||| | || |||| | ||||| Sbjct 1700580 ACGATGCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCG 1700639 Query 16692 -TATCTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTC 16750 | | | | || ||||| | || ||||| || | |||||| ||||| ||||| Sbjct 1700640 GTGGTTAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTC 1700699 Query 16751 CAAAAAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAAC 16810 || || ||||| |||| ||||| ||||||| ||| || | | ||| |||| || ||| Sbjct 1700700 CAGAATGAAGCTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAAC 1700759 Query 16811 A 16811 | Sbjct 1700760 A 1700760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462491846039600