Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1371 113 1e-19 seq2087 104 5e-17 >seq1371 Length=8752182 Score = 113 bits (124), Expect = 1e-19 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 ||||| | | ||| ||| | || || || || || |||||||||| ||||||||| | Sbjct 2961139 TGGACAGTGAGATAATCTATGACAGGGACTTTGACTATGATTTCTTTGGTTTCAAAACCC 2961080 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| ||| |||||||| || || | || | | | ||||| || ||||||||| Sbjct 2961079 TCGAGAGATCATATCTCCTGAAGGTTCAAGGGACGGTTGTGGAGAGACCGCAGCACATGC 2961020 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTAC 248961 ||||| | || ||||| ||||| ||||||||||| || || | || | || |||||||| Sbjct 2961019 TGATGAGGGTTGCTGTTGGGATCCACAAGGATGATATCGA-ATCGGCCATCAAGACGTAC 2960961 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| || | ||| | || ||||| | || || |||||||| || || || Sbjct 2960960 CACTTGATGTCCCAAAGGTGGTTCACCCATGCTTCTCCAACTCTCTTCAATGCGGGCAC 2960902 >seq2087 Length=2955978 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||||||||| ||| ||||| || |||| ||| |||||||| || | Sbjct 1897481 GACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGAGATCATATCTCCTGAAGGTC 1897422 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || | | ||||| || |||||||||||||||| | || ||||| ||||| ||| Sbjct 1897421 CAAGGGACAGTTGTGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGATCCAC 1897362 Query 248929 AAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACGCTGGATGACA 248988 |||||||| || ||| | || |||| ||| | ||| || | ||| | || Sbjct 1897361 AAGGATGATATCGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTTCACC 1897302 Query 248989 CATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||||| | || || |||||||| || || || Sbjct 1897301 CATGCTTCTCCAACTCTCTTCAATGCTGGCAC 1897270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073718440894848