Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1371 147 2e-30 seq2087 136 4e-27 seq3481 82.4 7e-11 seq448 82.4 7e-11 >seq1371 Length=8752182 Score = 147 bits (162), Expect = 2e-30 Identities = 378/565 (67%), Gaps = 18/565 (3%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||||||||| ||||| || || |||| || || ||||| || || |||||| Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAA 14322 ||||||||||| || || ||||| | ||| || | || ||| ||| ||| || ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAGAA 1700302 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14382 || || ||||| |||||| || ||||| | || ||||||| || | | | Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA-----TTCAGCACCA 1700357 Query 14383 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14440 | ||||| |||||| |||| || || |||| | || || |||||||| ||| Sbjct 1700358 TCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCA 1700417 Query 14441 TTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14499 ||| | ||| || |||| | | ||||| || || | ||| ||| | || Sbjct 1700418 CGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAG-AAGAGAGTA 1700476 Query 14500 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG- 14558 |||||||||||| |||||||| || || || || || ||||| ||| | |||||| | Sbjct 1700477 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 1700536 Query 14559 -ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTA 14617 ||| || ||||| |||||| |||| | ||| || ||| || || || Sbjct 1700537 AACC--TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGAT 1700594 Query 14618 GCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGA--GTTTTT 14675 || || || || || | |||| | || || | || || || || | | | || Sbjct 1700595 GCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTT 1700654 Query 14676 TCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACA 14734 ||| | | | || ||| | |||||||| ||||| || | ||||| || ||| || Sbjct 1700655 TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCA 1700714 Query 14735 GCTTTTTTATACATTACCCATATTT 14759 |||||||| |||||| |||| |||| Sbjct 1700715 GCTTTTTTGTACATTTCCCAGATTT 1700739 >seq2087 Length=2955978 Score = 136 bits (150), Expect = 4e-27 Identities = 379/571 (66%), Gaps = 28/571 (5%) Strand=Plus/Plus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||| ||||||||||| || || |||| || || ||||| || || ||||| Sbjct 719004 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 719063 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGA 14321 || ||||| | || || ||||| | ||| || | || ||| || | ||||| |||| Sbjct 719064 ACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGA-TGGAGCAAAAACTCCCGGAGAAGA 719122 Query 14322 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14381 | || || ||||| |||||| || ||||| | || ||||||| || | | Sbjct 719123 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA-----TTCAGCACC 719177 Query 14382 AT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14439 || ||||| |||||| |||| || || |||| | || || |||||||| || Sbjct 719178 ATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 719237 Query 14440 ATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-T 14498 | ||| | ||| || |||| | | || || || || | ||| ||| | | Sbjct 719238 ACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAG-AAGAGAGT 719296 Query 14499 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 ||||||||||||| |||||||| || || || || || ||||| ||| | |||||| | Sbjct 719297 ACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAG 719356 Query 14559 --ACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14616 ||| || |||||| |||||| |||| | ||| || |||||| || ||| Sbjct 719357 CAACC--TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGA 719414 Query 14617 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTT--- 14673 || || || || || | |||| | || | | |||| ||| | | ||| || Sbjct 719415 TGCGGCGAAGAAGGCGAGGATGTGGGTGAT---GAAATGCTGTTCGT--CGGAGGTTAAG 719469 Query 14674 ----TTTCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTA 14728 ||||| | | | || ||| | |||||||| ||||| || | ||||| || | Sbjct 719470 ACGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAA 719529 Query 14729 GCAACAGCTTTTTTATACATTACCCATATTT 14759 || |||||||||| |||||| |||| |||| Sbjct 719530 GCTTCAGCTTTTTTGTACATTTCCCAGATTT 719560 >seq3481 Length=11062796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||||| || ||||| || || || ||||| ||||||||| | ||||| Sbjct 10815768 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 10815709 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 || ||||||| |||| ||||| | ||||||||| ||| Sbjct 10815708 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA 10815669 >seq448 Length=4822964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 14203 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 14262 ||| ||||||||||| || ||||| |||||||| ||||| ||||| || | ||||| Sbjct 2891979 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 2891920 Query 14263 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 || ||||||| |||| ||||| | ||||||||| ||| Sbjct 2891919 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA 2891880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482324581790480