Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3320 100 2e-16 seq1717 96.9 3e-15 seq2417 93.3 3e-14 seq3251 89.7 4e-13 seq607 89.7 4e-13 seq530 89.7 4e-13 seq863 82.4 6e-11 >seq3320 Length=4692610 Score = 100 bits (110), Expect = 2e-16 Identities = 163/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||||| || ||||| || ||||| ||||| || || Sbjct 1079746 CCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATTTTGTAATCTGCA 1079687 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||||||||| || ||| |||| | | ||||||||| || Sbjct 1079686 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 1079627 Query 18219 ACGCCTTCCTTATC--GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | |||||| || || || || ||| ||||| | | | ||||| | ||| Sbjct 1079626 ATGCCTTCTTTGTCTTGGATCTTGGTT--TTGACATTGTCGATTGTGTCCGATGATTCGA 1079569 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| | ||| ||| |||| || || | ||||| || ||||| ||||| ||| Sbjct 1079568 CTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTT 1079516 >seq1717 Length=9716283 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || |||| ||| |||| ||||| || ||||| || ||||||||||| || || Sbjct 1668520 CCCCCACGAAGTCGAAGCACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCA 1668579 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | |||| | | ||||||||||||||| || ||| |||| | | ||||||||| || Sbjct 1668580 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 1668639 Query 18219 ACGCCTTCCTTATC-GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || | | ||| | ||||| | | | ||||| | ||| Sbjct 1668640 ATGCCTTCTTTGTCTTGGATCTTGAT-TTTGACATTGTCGATTGTGTCGGATGATTCGAC 1668698 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 || | ||| ||| |||| || || | ||||| || ||||| ||||| ||| Sbjct 1668699 CTCTAAGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATATTT 1668750 >seq2417 Length=2538752 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||| | || | ||| |||| ||||||||| || || ||||| ||||||||||| || Sbjct 2310416 TCCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATGTTGTAGTCTGC 2310357 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | || | | ||| || | || || || ||| |||| | |||||| ||||| ||| Sbjct 2310356 AAGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGG 2310297 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| |||||||| ||| | |||||| | | | ||||| | ||| Sbjct 2310296 AATGCCCTCCTTATCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTCTCAAC 2310237 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | ||||| |||| || ||||| || || || |||||||||||| Sbjct 2310236 CTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATT 2310188 >seq3251 Length=7052893 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || ||||| ||||||||||| || | ||| | | ||| Sbjct 3481182 AGGACTAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCA 3481241 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || || |||| || || || || ||| || | || |||||||| Sbjct 3481242 TCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCC 3481301 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||| ||| | ||| || | ||||||| | Sbjct 3481302 TGAATTTTGGTCTTGACATTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTC 3481361 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| ||||| ||||| |||||||| Sbjct 3481362 TTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 3481393 >seq607 Length=2562756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || ||||| ||||||||||| || | ||| | | ||| Sbjct 507233 AGGACTAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCA 507174 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 ||||| || || || || |||| || || || || ||| || | || |||||||| Sbjct 507173 TCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCT 507114 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||||| |||||| | ||| ||||||| | |||| || | ||| ||| | Sbjct 507113 TGAATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCGACCTCGAGGGTTATGGTC 507054 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || |||| ||||| ||||| |||||||| Sbjct 507053 TTCCCAGTCAGGGTTTTCACAAAGATTTGCAT 507022 >seq530 Length=4616287 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || | || |||| |||||| || || || || || |||||||||||||| Sbjct 1166521 TCCTCCCCTAAGACGGAGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGC 1166580 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | ||| || | || || || || |||| || ||||| || || ||| Sbjct 1166581 GAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGG 1166640 Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||||| |||||| | ||| ||||| | ||| Sbjct 1166641 GATTCCTTCCTTGTCTTGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGAC 1166700 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||| | |||||| | || || || || ||||| |||||||| |||||| Sbjct 1166701 TTCGAGGGTGATTGTCTTTCCTGTTAAGGTTTTGACAAAAATCTGCATT 1166749 >seq863 Length=2839217 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| |||||| || || || ||||| || ||||| || || | || | | ||| Sbjct 2112533 AGCACCAAGTGAAGGGTAGACTCCTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCA 2112474 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| |||| | ||||| || ||| || | |||||||||||| Sbjct 2112473 TCAAGCTGCTTCCCGGCAAAGATCAACCTTTGCTGGTCCGGAGGAATGCCTTCCTTATCC 2112414 Query 18234 GCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | |||| ||| | ||| ||||||| | ||| || | ||||| | Sbjct 2112413 TGAATCT-TGGCTTTGACATTATCAATAGTGTCAGAGCTCTCAACCTCCAAAGTGATAGT 2112355 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || ||||| || || ||||||||||||||| Sbjct 2112354 CTTCCCTGTCAAAGTCTTAACAAAAATTTGCATT 2112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379327883333070