Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq1717 100 2e-16 seq993 82.4 6e-11 >seq1717 Length=9716283 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| |||| || ||||| |||||| | || |||||||| | Sbjct 1668746 ATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCATCC 1668687 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| || || || | ||||||||| | || || || Sbjct 1668686 GACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 1668627 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||||| ||||| | ||| || |||||| |||||||| | || | ||||||| | Sbjct 1668626 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAAC 1668567 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| || | ||||||||||| ||| | ||| | || || ||| Sbjct 1668566 ATTCAGAAGGAATCGACGCTTCATTTGGTGCTTCGACTTCGTGGGGGT 1668519 >seq993 Length=2602326 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 ||||||||||| || |||||| ||||||| ||||| |||||| | || || ||||| Sbjct 374420 ATGCAGATATTCGTGAAAACCCTAACCGGGAAAACCATAACCCTAGAGGTTGAATCCTCA 374479 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | ||| ||| || || | || |||||| | || |||||| Sbjct 374480 GACACGATCGACAATGTGAAGACTAAGATCCAAGACAAGGAAGGCATTCCCCCAGACCAG 374539 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 || ||| | |||| || || ||||| || ||||| | ||| | ||| |||| | Sbjct 374540 CAGCGTCTGATATTCGCCGGAAAACAGCTCGAAGACGGCCGGACACTCGCCGACTACAAC 374599 Query 25012 ATACAGAAAGAGGCCACGCTTCA 25034 || ||||| ||| | || ||||| Sbjct 374600 ATCCAGAAGGAGTCGACCCTTCA 374622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418286228093120