Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2087 228 1e-54 seq1371 206 3e-48 >seq2087 Length=2955978 Score = 228 bits (252), Expect = 1e-54 Identities = 421/611 (69%), Gaps = 15/611 (2%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || ||| || || || || || || || ||||||| || | ||||| || | Sbjct 718997 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 719056 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCC-G 33692 | || | || |||||||| ||||||||||||||||| || ||||| || || ||| | Sbjct 719057 AGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 719115 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 33748 || ||||| || ||||| || |||||| ||||| | ||||| || ||| | || Sbjct 719116 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGC 719174 Query 33749 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33808 | ||| ||||| |||||||||| |||||||| || |||||||| || ||||| Sbjct 719175 ACCATCA---ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTC 719231 Query 33809 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33868 || ||| ||| |||| | |||| ||| |||||| | |||||| || | | ||| Sbjct 719232 AATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAG 719291 Query 33869 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33928 | |||||||| || ||||||||||||||||| || || || || |||||| | ||| Sbjct 719292 AGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGC 719351 Query 33929 CTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATC 33988 || | || ||| || ||| | |||| | | || | ||| || ||||| || || Sbjct 719352 TTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTC 719411 Query 33989 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---- 34044 | || || || || || | | || | || |||| | |||||| | |||| Sbjct 719412 AGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGAC 719471 Query 34045 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 34104 | || | ||| | | | ||||| || | ||| |||||||| | ||||| ||||| | Sbjct 719472 GGTT-TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAG 719530 Query 34105 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATC 34164 | || || ||||| ||||| | |||||| | | |||| |||||||| ||| |||| Sbjct 719531 CTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATC 719590 Query 34165 TATTTGGATTT 34175 ||| ||| ||| Sbjct 719591 TATCTGGGTTT 719601 >seq1371 Length=8752182 Score = 206 bits (228), Expect = 3e-48 Identities = 409/601 (68%), Gaps = 11/601 (2%) Strand=Plus/Plus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||| ||||| || || ||||||| || | ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| | ||||||||||| ||||| || ||||| ||| ||| || ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 1700303 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33757 || ||||| || |||||| ||||| | ||||| || ||| | || | ||| Sbjct 1700304 ATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA-- 1700360 Query 33758 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| |||||||||| |||||||| || |||||||| || ||||| || ||| Sbjct 1700361 -ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 1700419 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||| |||| | |||| ||| |||||| | ||||| || | | |||| ||||| Sbjct 1700420 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACAT 1700479 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||| || ||||||||||||||||| || || || || |||||| | ||| || | || Sbjct 1700480 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 1700539 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | |||| | | || | ||| || || || || || || || Sbjct 1700540 CTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGC 1700599 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCCA 34054 || || || | | || | || |||| | |||||| | ||| || | | | ||| Sbjct 1700600 GAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCA 1700659 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 | | | ||||| || | ||| |||||||| | ||||| ||||| || || || || Sbjct 1700660 GTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTT 1700719 Query 34115 TTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATT 34174 ||| ||||| | |||||| | | |||| |||||||| ||| ||||||| ||| || Sbjct 1700720 TTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTT 1700779 Query 34175 T 34175 | Sbjct 1700780 T 1700780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629790155698080