Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1371 122 8e-23 seq2087 111 1e-19 >seq1371 Length=8752182 Score = 122 bits (134), Expect = 8e-23 Identities = 387/593 (65%), Gaps = 13/593 (2%) Strand=Plus/Plus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | |||||||||| ||| || || || || || |||||| Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATAT--AGCAGCAAATGAACCAGAAAAGA 11747 || |||||||| || || ||||| | ||| || || ||||| || | ||||| |||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTT--CCAGAGAAGA 1700301 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT- 11806 | || || || ||| ||||| || | || || || || | | | || || Sbjct 1700302 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA--CGATTCAGCACCATC 1700359 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| ||||||||||| ||||| || || || || ||||| || || Sbjct 1700360 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 1700419 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | ||| |||| || |||| | | || || |||| | | | ||||| Sbjct 1700420 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACAT 1700479 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 ||| || ||||| ||||| || || ||||| || ||||||||| || || || | | Sbjct 1700480 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 1700539 Query 11986 CTGTACATCC-ACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || ||| ||| |||||| | || | |||||| || || || || | | Sbjct 1700540 CTGAACCTCCTTCAT-GAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 1700598 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCC 12101 | || || || || || || | || || | | |||||| | ||||| | |||| Sbjct 1700599 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 1700658 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| || | ||| |||||||| | ||||| || || | | || Sbjct 1700659 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 1700718 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 ||| ||||||| |||||| | | || | ||| ||||| ||| ||| ||| Sbjct 1700719 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 1700771 >seq2087 Length=2955978 Score = 111 bits (122), Expect = 1e-19 Identities = 569/893 (64%), Gaps = 31/893 (3%) Strand=Plus/Plus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 || ||||| || | ||||| || | || || ||||||||||| |||| || || || | Sbjct 718714 TTCTGATACTCCCCAACTC-TCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 718772 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | || || || | || | | || ||||| || || | | | | || Sbjct 718773 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAA 718832 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 | ||| ||||| || || || || |||||| ||| | ||| ||||| || | || Sbjct 718833 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 718892 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | |||||||| ||| | || | ||||| || |||| || ||||| | | ||| Sbjct 718893 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 718952 Query 11578 CGACGTTATAACTTC------CTTAGATGGTGGATGTAATAAA-TGTTTAAACATTAAAC 11630 | | | | |||| || || | | | | ||| ||| ||| | || Sbjct 718953 CCCC--TGAACCTTCTCCACACTCAGCTTCTTCTTC-AGTAAGCTGT----ACAACAGAC 719005 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||| |||||||| | |||||||||| ||| || || || || || ||||| | Sbjct 719006 AAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAAC 719065 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAAC---CAGAAAAGA 11747 | ||||| | || || ||||| | ||| || || | |||||| ||| | || |||| Sbjct 719066 CCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGG-AGCAAA--AACTCCCGGAGAAGA 719122 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT- 11806 | || || || ||| ||||| || | || || || || | | | || || Sbjct 719123 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAA--CGATTCAGCACCATC 719180 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 ||||| ||||||||||| ||||| || || || || ||||| || || Sbjct 719181 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 719240 Query 11866 AAATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACAT 11925 ||| | ||| |||| || |||| | | ||| || |||| | | | ||||| Sbjct 719241 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACAT 719300 Query 11926 TTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACA 11985 ||| || ||||| ||||| || || ||||| || ||||||||| || || || | | Sbjct 719301 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 719360 Query 11986 CTGTACATC-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 ||| || || ||| |||||| | || | |||||| || || || ||| | | Sbjct 719361 CTGGACCTCTTTCAT-GAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGG 719419 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAA---TTTATCCC 12101 | || || || || || || | || || | | |||||| ||||| | |||| Sbjct 719420 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCC 719479 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 | | | | ||||| || | ||| |||||||| | ||||| || || | | || Sbjct 719480 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 719539 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCTA 12214 ||| ||||||| |||||| | | || | ||| ||||| ||| ||| ||| Sbjct 719540 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTA 719592 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468504384031840