Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2087 230 3e-55 seq1371 208 1e-48 >seq2087 Length=2955978 Score = 230 bits (254), Expect = 3e-55 Identities = 606/916 (66%), Gaps = 23/916 (3%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||| || || || || || | || || || |||||||| || |||| | || || Sbjct 718713 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 718772 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAAT 35985 ||||| |||||||||| || ||| |||| |||| | || | ||| | Sbjct 718773 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAA 718832 Query 35986 CAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAG 36045 || ||| ||||| ||||| || || || |||||| ||||| ||||| || | || Sbjct 718833 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 718892 Query 36046 TTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT 36105 || || ||||| || |||| | || ||| | || ||| ||| || || | | || Sbjct 718893 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 718952 Query 36106 AGATATTACTGTTTCTTCACTCGGTGGATAC---AATAAA-TGTTTAAACATCAAACATG 36161 || | || ||||| | | | | ||| ||| ||| || ||| | Sbjct 718953 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 719008 Query 36162 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 36221 | || || || || || || ||||||| || | ||||| || || || | || | Sbjct 719009 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 719068 Query 36222 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAA-AAGAAAATT 36280 ||||||| ||||||||||||||||| || ||||| ||||| ||| | | |||||||| Sbjct 719069 GCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 719127 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTAT 36336 ||||| || ||||| ||||| | ||||| || ||| | |||| ||| || Sbjct 719128 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA---AT 719183 Query 36337 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAA 36396 ||| |||||||||| |||||||| || |||||||| || || || || ||| ||| Sbjct 719184 CCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAA 719243 Query 36397 GAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTC 36456 |||| | |||| ||| |||||| | ||| || || | | |||| |||||||| Sbjct 719244 AAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTC 719303 Query 36457 CGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTG 36516 || ||||||||||||||||| ||||| || || |||||| | ||| || | || ||| Sbjct 719304 AGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTG 719363 Query 36517 TACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAA 36576 || ||| | |||| | | || | ||| || ||||| |||||| || || || Sbjct 719364 GACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAA 719423 Query 36577 AAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA----GTTTATTCCAAT 36632 || || | | || | || |||| | ||||| | |||| | || | ||| | Sbjct 719424 GAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT-TCCCAGT 719482 Query 36633 CATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTT 36692 | | ||||| || | ||| |||||||| | ||||| ||||| || || || |||| Sbjct 719483 GACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTT 719542 Query 36693 TATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATTTT 36752 | ||||| | |||||| | | |||| |||||| || ||| ||||||| | | |||| Sbjct 719543 TGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTTT 719602 Query 36753 TTGCAAGGATTGGTTC 36768 || || | ||| || Sbjct 719603 CTGTGAGAAGTGGGTC 719618 >seq1371 Length=8752182 Score = 208 bits (230), Expect = 1e-48 Identities = 422/619 (68%), Gaps = 13/619 (2%) Strand=Plus/Plus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || ||||| ||||| || || ||||||| || | ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 || ||||| | ||||||||||| ||||| || ||||| ||| || |||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 1700302 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 36332 ||| ||||| || ||||| ||||| | ||||| || ||| | |||| ||| Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA- 1700360 Query 36333 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCAT 36392 ||||| |||||||||| |||||||| || |||||||| || || || || ||| Sbjct 1700361 --ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 1700418 Query 36393 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACA 36452 ||| |||| | |||| ||| |||||| | || || || | | |||| |||| Sbjct 1700419 GAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 1700478 Query 36453 TTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAA 36512 |||| || ||||||||||||||||| ||||| || || |||||| | ||| || | || Sbjct 1700479 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 1700538 Query 36513 TCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTG 36572 ||| || || | |||| | | || | ||| || || || ||||| || | Sbjct 1700539 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 1700598 Query 36573 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTT--TATTCC 36629 | || || || | | || | || |||| | ||||| | ||| || | | | || Sbjct 1700599 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 1700658 Query 36630 AATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | | | | ||||| || | ||| |||||||| | ||||| ||||| || || || | Sbjct 1700659 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 1700718 Query 36690 TTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGAT 36749 |||| ||||| | |||||| | | |||| |||||| || ||| ||||||| | | | Sbjct 1700719 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGT 1700778 Query 36750 TTTTTGCAAGGATTGGTTC 36768 ||| || || | ||| || Sbjct 1700779 TTTCTGTGAGAAGTGGGTC 1700797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658144120120240