Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1776 102 8e-17 seq2618 98.7 1e-15 seq2164 95.1 1e-14 seq1717 95.1 1e-14 seq896 95.1 1e-14 seq993 93.3 4e-14 seq863 87.8 2e-12 seq2390 86.0 6e-12 seq2417 82.4 8e-11 >seq1776 Length=5111350 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| |||||| | || ||||||| |||||||| ||||| || || || || Sbjct 1205316 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 1205257 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || ||| || |||||||| || || ||| |||||| | ||||||||| || || Sbjct 1205256 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGATCTGGGGGA 1205197 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCAC 139716 ||||| || || || ||| | |||| || | | || || |||| | ||| || Sbjct 1205196 ATGCCCTCCTTATCT-TGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGAC 1205138 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||| || ||||| || || |||||||||||||| Sbjct 1205137 CTCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 1205090 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || ||| | ||| | ||| | || ||||| || || ||||| ||||| Sbjct 1204633 GCCACCTCTTAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAATCAGC 1204574 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| ||||| ||||| || || ||| |||||| | ||||| || || || Sbjct 1204573 AAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 1204514 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| |||||||||| | | || | ||||| | ||| | Sbjct 1204513 AATACCTTCTTTGTC-TTGAATTTTTGTTTTGACATTATCAATAGTGTCAGAACTCTCAA 1204455 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| ||| | ||||| ||||| | || || || || || ||||| Sbjct 1204454 CTTCAAGGGTGATAGTCTTCCCGGTGAGGGTCTTAACAAAAATCTGCAT 1204406 >seq2618 Length=3490594 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || ||||| || || ||||| || ||| Sbjct 3445129 CCACCACGAAGACGAAGAACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCT 3445188 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || |||| |||||||| || || || || Sbjct 3445189 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 3445248 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||| | | || | ||||||| || || ||| Sbjct 3445249 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCGGAGGATTCGACC 3445308 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 3445309 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 3445355 >seq2164 Length=10083965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || || || || |||||||| |||||| Sbjct 642641 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCT 642582 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || |||| |||||||| || || || || Sbjct 642581 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 642522 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||| | | || | ||||| | || || || Sbjct 642521 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAGGATTCGACT 642462 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 642461 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 642415 >seq1717 Length=9716283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| ||| || || || |||||||| ||||| | ||| || ||||| Sbjct 1668538 ACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 1668597 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | ||||| |||||| |||| | ||||| ||||| || || |||||||||||||| | Sbjct 1668598 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 1668657 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||| | | || | |||||||| | || ||||| | ||| | || || Sbjct 1668658 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACCTCTAAGGTTATGGTTTTT 1668717 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCATA 139765 || || | ||||| ||||| || |||||| Sbjct 1668718 CCAGTTAGGGTTTTCACGAAAATCTGCATA 1668747 >seq896 Length=2616551 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || ||||| || || ||||| || ||| Sbjct 1343375 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1343316 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || |||| || ||||| || ||||| || Sbjct 1343315 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGG 1343256 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| ||| || ||| | | || | |||||| | || || || Sbjct 1343255 ATGCCTTCTTTGTCTTGGATCTTGGCTTTCACATTGTCGATTGTGTCAGAGGATTCGACT 1343196 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 1343195 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 1343149 >seq993 Length=2602326 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||||| || ||||| || || ||||| || ||| | ||| | |||||||||||| Sbjct 374623 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGTGTCCGGCCGTCTTCGAGCTG 374564 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||| || || | |||||||| ||||| || || || |||||||| ||||| ||| || Sbjct 374563 TTTTCCGGCGAATATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCTTGGATCTT 374504 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | | || | ||||| | || || ||||| | ||| | || || ||||| Sbjct 374503 AGTCTTCACATTGTCGATCGTGTCTGAGGATTCAACCTCTAGGGTTATGGTTTTCCCGGT 374444 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||||| |||||||| ||||| Sbjct 374443 TAGGGTTTTCACGAATATCTGCAT 374420 >seq863 Length=2839217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || || ||||| ||||| | || | || | || |||||||| || || Sbjct 2111834 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCA-TCCTCGAGCTGCTTCCC 2111776 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||||| | |||||||| || || || ||||||||||| ||| | || || | Sbjct 2111775 AGCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCTTGGTCT 2111717 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || || ||||| | | || ||||| | ||| | || || || ||||| | Sbjct 2111716 TAACATTGTCGACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAG 2111657 Query 139746 TTTTTACGAATATTTGCAT 139764 | ||||| || |||||||| Sbjct 2111656 TCTTTACAAAGATTTGCAT 2111638 >seq2390 Length=8026821 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||| | ||||| || || || || || ||||| || ||| Sbjct 2842997 CCACCACGAAGACGAAGAACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCT 2843056 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| |||||||||||||| || || | || |||||||| || || || || Sbjct 2843057 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAAATGAGACGTTGTTGGTCTGGTGGG 2843116 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| || ||| | | || | |||||| | || || ||| Sbjct 2843117 ATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATTGTCGATTGTGTCCGAGGATTCTACC 2843176 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||| ||||| || ||||| Sbjct 2843177 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 2843223 >seq2417 Length=2538752 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | || | ||||| || || || || |||||||| || || Sbjct 2310644 GCCACCACGGAGACGAAGGACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGC 2310585 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| || | ||| ||||||||| | |||| | ||||| || ||||| Sbjct 2310584 CAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 2310525 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| || | || || || | | || | ||||| | | ||| | Sbjct 2310524 AATTCCTTCCTTGTCC-TGTATCTTAGTCTTGACATTATCGATAGTGTCTGAGCTCTCGA 2310466 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | ||| | || || || ||||| || || || ||||||||||| Sbjct 2310465 CCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACAAATATTTGCAT 2310417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496042384011200