Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2087 230 3e-55 seq1371 206 4e-48 >seq2087 Length=2955978 Score = 230 bits (254), Expect = 3e-55 Identities = 419/608 (69%), Gaps = 9/608 (1%) Strand=Plus/Plus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || ||| || || || || || || || ||||||| || || ||||| || | Sbjct 718997 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 719056 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAG 50071 | || | || |||||||| ||||||||||||||||| || ||||| ||| ||| | Sbjct 719057 AGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGG 719116 Query 50072 AAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT 50131 | ||||| || ||||| || ||||| |||| | ||||| || ||| | | | Sbjct 719117 AGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AAC-GATTCAGC 719174 Query 50132 --CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 50189 ||| ||||| |||||||||| |||||||| || |||||||| || ||||| || Sbjct 719175 ACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAAT 719234 Query 50190 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 50249 ||| ||| |||| | |||| ||| |||||| | |||||| || | | |||| Sbjct 719235 TGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGA 719294 Query 50250 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 50309 |||||||| || ||||||||||||||||| || || || || |||||| | ||| || Sbjct 719295 GTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTC 719354 Query 50310 GGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACT 50369 | || ||| || ||| | |||| | | || | ||| || ||||| |||||| Sbjct 719355 AGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGA 719414 Query 50370 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA----GTT 50425 || || || || || | | || | || ||||| | ||||| || |||| | | Sbjct 719415 TGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGT 719474 Query 50426 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 50485 | | ||| | | | ||||| || | ||| |||||||| | ||||| ||||| || | Sbjct 719475 T-TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTT 719533 Query 50486 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 50545 | || ||||| ||||| | |||||| | | |||| |||||||| ||| ||||||| Sbjct 719534 CAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTAT 719593 Query 50546 TTGGATTT 50553 ||| ||| Sbjct 719594 CTGGGTTT 719601 >seq1371 Length=8752182 Score = 206 bits (228), Expect = 4e-48 Identities = 411/600 (69%), Gaps = 9/600 (2%) Strand=Plus/Plus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || ||||| ||||| || || ||||||| || || ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 || ||||| | ||||||||||| ||||| || ||||| ||| || ||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 1700302 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGT--CATGT 50136 || ||||| || ||||| |||| | ||||| || ||| | | | ||| Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AAC-GATTCAGCACCATCA 1700360 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| |||||||||| |||||||| || |||||||| || ||||| || ||| | Sbjct 1700361 ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGA 1700420 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 || |||| | |||| ||| |||||| | ||||| || | | |||| |||||| Sbjct 1700421 AAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATT 1700480 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 || || ||||||||||||||||| || || || || |||||| | ||| || | || | Sbjct 1700481 TCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACC 1700540 Query 50317 TGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 50376 || || || | |||| | | || | ||| || || || ||||| || || Sbjct 1700541 TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCG 1700600 Query 50377 AAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTT--TATTCCAA 50433 || || || | | || | || ||||| | ||||| || ||| || | | | ||| Sbjct 1700601 AAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAG 1700660 Query 50434 TCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTT 50493 | | | ||||| || | ||| |||||||| | ||||| ||||| || || || ||| Sbjct 1700661 TGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTT 1700720 Query 50494 TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 50553 || ||||| | |||||| | | |||| |||||||| ||| ||||||| ||| ||| Sbjct 1700721 TTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTT 1700780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718237501437040