Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1371 138 1e-27 seq2087 122 8e-23 seq3481 82.4 7e-11 seq448 82.4 7e-11 >seq1371 Length=8752182 Score = 138 bits (152), Expect = 1e-27 Identities = 378/566 (67%), Gaps = 20/566 (4%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| ||||| || || |||| || || ||||| || || |||||| Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAA 13990 ||||||||||| || || ||||| | ||| || | || |||| || || || ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAGAA 1700302 Query 13991 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGA 14050 || || ||||| |||||| || ||||| | || ||||||| || | | | Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA-----TTCAGCACCA 1700357 Query 14051 T--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 | ||||| |||||| |||| || || |||| | || || |||||||| ||| Sbjct 1700358 TCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCA 1700417 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-TA 14167 ||| | || || |||| | | ||||| || || | ||| ||| | || Sbjct 1700418 CGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAG-AAGAGAGTA 1700476 Query 14168 CATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC-- 14224 |||||||||||| |||||||| || || || || || ||||| ||||| | |||||| Sbjct 1700477 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC-GCGAGCTTCAG 1700535 Query 14225 CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACT 14284 | ||| || || ||| |||||| |||| | ||| || ||| || || || Sbjct 1700536 CAACC--TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGA 1700593 Query 14285 AGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGAGTT--T 14341 || || || || || | |||| | || || | || || || | ||| || | | Sbjct 1700594 TGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGT 1700653 Query 14342 TTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGAC 14401 || ||| | | ||| | |||||||| ||||| || | ||||| || ||| | Sbjct 1700654 TTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTC 1700713 Query 14402 AGCTTTTTTATACATTACCCATATTT 14427 ||||||||| |||||| |||| |||| Sbjct 1700714 AGCTTTTTTGTACATTTCCCAGATTT 1700739 >seq2087 Length=2955978 Score = 122 bits (134), Expect = 8e-23 Identities = 374/567 (66%), Gaps = 20/567 (4%) Strand=Plus/Plus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||| ||||||||||| || || |||| || || ||||| || || ||||| Sbjct 719004 ACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAA 719063 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-AAATGACCCGGAAAAGA 13989 || ||||| | || || ||||| | ||| || | || ||| ||| |||||| |||| Sbjct 719064 ACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGA-TGGAGCAAAAACTCCCGGAGAAGA 719122 Query 13990 ATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCG 14049 | || || ||||| |||||| || ||||| | || ||||||| || | | Sbjct 719123 AAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA-----TTCAGCACC 719177 Query 14050 AT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGC 14107 || ||||| |||||| |||| || || |||| | || || |||||||| || Sbjct 719178 ATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGC 719237 Query 14108 ATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA-T 14166 | ||| | || || |||| | | || || || || | ||| ||| | | Sbjct 719238 ACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAG-AAGAGAGT 719296 Query 14167 ACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC- 14224 ||||||||||||| |||||||| || || || || || ||||| ||||| | |||||| Sbjct 719297 ACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC-GCGAGCTTCA 719355 Query 14225 -CGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCAC 14283 | ||| || || || |||||| |||| | ||| || |||||| || ||| Sbjct 719356 GCAACC--TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAG 719413 Query 14284 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTT---GAGTT 14340 || || || || || | |||| | || || | || || || | | || Sbjct 719414 ATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGG 719473 Query 14341 TTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14400 ||| ||| | | ||| | |||||||| ||||| || | ||||| || ||| Sbjct 719474 TTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTT 719533 Query 14401 CAGCTTTTTTATACATTACCCATATTT 14427 |||||||||| |||||| |||| |||| Sbjct 719534 CAGCTTTTTTGTACATTTCCCAGATTT 719560 >seq3481 Length=11062796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||| || ||||| || || || ||||| ||||||||| | ||||| Sbjct 10815768 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 10815709 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||||||| |||| ||||| | ||||||||| ||| |||| Sbjct 10815708 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 10815665 >seq448 Length=4822964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 82/105 (78%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||| || ||||| |||||||| ||||| ||||| || | ||||| Sbjct 2891979 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 2891920 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 || ||||||| |||| ||||| | ||||||||| ||| |||| Sbjct 2891919 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 2891876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479707095852400