Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1371 138 1e-27 seq3481 82.4 7e-11 seq448 82.4 7e-11 >seq1371 Length=8752182 Score = 138 bits (152), Expect = 1e-27 Identities = 561/867 (65%), Gaps = 38/867 (4%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| ||||| || | |||||| || ||||| || ||||| || |||| || || || Sbjct 1699892 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 1699951 Query 13428 TTCCATAAAATCGAATGGATTTGTTGA----CATAAACACTTTATCACAACCTAGTTCTA 13483 ||||| ||||||| || || ||| | ||||| |||| ||||| || ||| | Sbjct 1699952 CTCCATCCAATCGAACGGGTTC--TGAACTCCGTAAAC-CTTT-TCACACCCAAGTGCAG 1700007 Query 13484 ATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTA 13543 || | ||||| |||| ||||||||| || ||| ||| | ||||| ||||| || | Sbjct 1700008 CCAACAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAA 1700067 Query 13544 TTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTA 13603 || || || |||| || |||| || ||| || || || || || || | Sbjct 1700068 CCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATCCTTAA 1700127 Query 13604 TAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT------AGATGTTTAAAAATTA 13657 || || | | ||| | | || | || | || ||| || | Sbjct 1700128 CTATCCCCTGCACCTTCTCA--ACACTCAGCTTCTTCTTCAGTAAGCTGTATAGCAGG-- 1700183 Query 13658 AACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTA 13717 || ||||||||||| ||||| || || |||| || || ||||| || || |||| Sbjct 1700184 --CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTA 1700241 Query 13718 ATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAG 13776 ||||||||||||| || || ||||| | ||| || | || ||| ||| ||| || ||| Sbjct 1700242 ATCCTGGCATCAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAG 1700300 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || ||||| |||||| || |||| | || ||||||| || | Sbjct 1700301 AAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA-----TTCAGCAC 1700355 Query 13837 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || ||||| |||||| |||| || || |||| | || || ||||| |||| Sbjct 1700356 CATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTG 1700415 Query 13895 CATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA- 13953 || || | ||| || |||| | | ||||| || || | ||| ||| | Sbjct 1700416 CACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAG-AAGAGAG 1700474 Query 13954 TACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCT 14013 |||||||||||||| |||||||| || || || || || ||||| ||| | |||||| Sbjct 1700475 TACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCA 1700534 Query 14014 G--ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCAC 14071 | ||| || |||||| |||||| | || | || || ||| || || || Sbjct 1700535 GCAACC--TGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTG 1700592 Query 14072 TAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGAG-TTT 14129 || || || || || | |||| | || || | || || || | ||| || | Sbjct 1700593 ATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGG 1700652 Query 14130 TTTCCAATCGGCTAA-ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGA 14188 ||||| | | | || ||| | |||||||| ||||| || | ||||| || ||| Sbjct 1700653 TTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTT 1700712 Query 14189 CAGCTTTTTTATACATTACCCATATTT 14215 |||||||||| |||||| |||| |||| Sbjct 1700713 CAGCTTTTTTGTACATTTCCCAGATTT 1700739 >seq3481 Length=11062796 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||||| || ||||| || || || ||||| ||||||||| | ||||| Sbjct 10815768 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 10815709 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || ||||||| |||| ||||| | ||||||||| ||| Sbjct 10815708 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA 10815669 >seq448 Length=4822964 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 ||| ||||||||||| || ||||| |||||||| ||||| ||||| || | ||||| Sbjct 2891979 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 2891920 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || ||||||| |||| ||||| | ||||||||| ||| Sbjct 2891919 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA 2891880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478567945493040