Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq1717 122 7e-23 seq3320 109 4e-19 seq2 89.7 4e-13 seq374 84.2 2e-11 >seq1717 Length=9716283 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||||||||| | || ||||| || | |||||||| | Sbjct 1668520 CCCCCACGAAGTCGAAGCACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCA 1668579 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 1668580 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 1668639 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||||| || | | ||||||| | ||||| Sbjct 1668640 ATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACC 1668699 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| ||||| |||||||| ||||| |||||||| ||||| ||||| || Sbjct 1668700 TCTAAGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATATT 1668749 >seq3320 Length=4692610 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| |||| | ||||| ||| | || ||||| || | |||||||| | Sbjct 1079746 CCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATTTTGTAATCTGCA 1079687 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| | | | || ||||||||||| || ||||| || || || |||||||| | || Sbjct 1079686 AGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGG 1079627 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || |||| |||||| || | | |||||| | ||||| Sbjct 1079626 ATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCGATTGTGTCCGATGATTCGACT 1079567 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| ||||| ||||| || ||||| |||||||| ||||| ||||| || Sbjct 1079566 TCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTT 1079517 >seq2 Length=8241039 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||||| | ||||| ||||| || | || || ||||| || || || |||||| Sbjct 3865222 TTGTAATCGGCAAGAGTACGGTCGTCTTCAAGCTGCTTTCCGGCGAAGATGAAACGCTGT 3865281 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 ||||||| | | |||||||| || ||| | ||||| || || || || Sbjct 3865282 TGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGTTGTTAATGGTATCA 3865341 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | || || || || | || || ||||| || || |||||||||||||| ||||||||| Sbjct 3865342 CTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCACAAATATTTGCATT 3865401 Query 43111 TT 43112 || Sbjct 3865402 TT 3865403 >seq374 Length=4160932 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| |||| |||||| || | ||||| |||| ||| ||||| | || || Sbjct 3965952 CACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGGCCATCCTC 3965893 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || || || |||||||| | ||| || || | || | |||||| || || || Sbjct 3965892 GAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCCTTGTC-CT 3965834 Query 43020 G-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTT 43077 | ||| || || || ||| |||||| ||| ||| || || | || || || Sbjct 3965833 GAATCTTGGTCTTAACATTGTCAATGGTGTCG-GAGCTCTCAACCTCCAAAGTAATGGTC 3965775 Query 43078 TTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || ||||| || || ||||| ||||| ||||| Sbjct 3965774 TTCCCGGTAAGGGTCTTCACGAAAATCTGCAT 3965743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381353397274188