Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2087 233 3e-56 seq1371 214 2e-50 >seq2087 Length=2955978 Score = 233 bits (258), Expect = 3e-56 Identities = 421/610 (69%), Gaps = 13/610 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| || || || || || || || || |||| || | ||||| || | Sbjct 718997 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 719056 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAG 42176 | || | || |||||||| ||||||||||||||||| || || || ||||| ||| | Sbjct 719057 AGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 719115 Query 42177 AA-AAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 42231 | ||||| || ||||| || ||||| ||||| | ||||| || ||| | || Sbjct 719116 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGC 719174 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| ||||| |||||||||| |||||||| || |||||||| || ||||| Sbjct 719175 ACCATCA---ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTC 719231 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || ||| ||| |||| | |||| ||| |||||| | ||| || || | | ||| Sbjct 719232 AATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAG 719291 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 | |||||||| || ||||||||||||||||| || || || || |||||| | || Sbjct 719292 AGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGC 719351 Query 42412 CTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTC 42471 || | |||||| || ||| | |||| | | || | ||| ||| ||||| ||||| Sbjct 719352 TTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTC 719411 Query 42472 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA--- 42528 | || || || || || | | || | || |||| | |||||| | ||||| Sbjct 719412 AGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGAC 719471 Query 42529 TTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGC 42588 | | ||| | | | ||||| || | ||| |||||||| | ||||| ||||| || Sbjct 719472 GGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGC 719531 Query 42589 TTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCT 42648 ||| || ||||| ||||| | |||||| | | |||| ||||||||| ||| ||||| Sbjct 719532 TTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCT 719591 Query 42649 ATTTGGATTT 42658 || ||| ||| Sbjct 719592 ATCTGGGTTT 719601 >seq1371 Length=8752182 Score = 214 bits (236), Expect = 2e-50 Identities = 412/602 (68%), Gaps = 13/602 (2%) Strand=Plus/Plus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || ||||| ||||| || || || |||| || | ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| | ||||||||||| ||||| || || || ||| || |||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGA-GCAGAAACTTCCAGAGAAGAA 1700302 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCAT 42239 || ||||| || ||||| ||||| | ||||| || ||| | |||| ||| Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA- 1700360 Query 42240 GTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCAT 42299 ||||| |||||||||| |||||||| || |||||||| || ||||| || ||| Sbjct 1700361 --ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 1700418 Query 42300 TAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACA 42359 ||| |||| | |||| ||| |||||| | || || || | | |||| |||| Sbjct 1700419 GAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 1700478 Query 42360 TTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 |||| || ||||||||||||||||| || || || || |||||| | || || | || Sbjct 1700479 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 1700538 Query 42420 CCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTG 42479 |||| || || | |||| | | || | ||| ||| || || ||||| || | Sbjct 1700539 CCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGG 1700598 Query 42480 CAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAA---TTTATTCC 42536 | || || || | | || | || |||| | |||||| | ||||| | | || Sbjct 1700599 CGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCC 1700658 Query 42537 AATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCT 42596 | | | | ||||| || | ||| |||||||| | ||||| ||||| ||||| || | Sbjct 1700659 AGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTT 1700718 Query 42597 TTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGAT 42656 |||| ||||| | |||||| | | |||| ||||||||| ||| ||||||| ||| | Sbjct 1700719 TTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGT 1700778 Query 42657 TT 42658 || Sbjct 1700779 TT 1700780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671109955109360