Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1776 98.7 1e-15 seq2164 95.1 1e-14 seq1717 86.0 6e-12 seq3320 84.2 2e-11 >seq1776 Length=5111350 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| |||||| | || || |||| |||||| || ||||| || ||||| || Sbjct 1205316 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGGATATTGTAGTCAGCA 1205257 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || ||| || ||||| || || || ||| |||||| | ||||||||| || || Sbjct 1205256 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTTTGCTGATCTGGGGGA 1205197 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| ||| || | | || | ||||| | || || Sbjct 1205196 ATGCCCTCCTTATCTTGAATCTTTGCCTTGACATTGTCAATGGTGTCTGAACTCTCGACC 1205137 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||| || ||||| || || |||||||||||||| Sbjct 1205136 TCCAAAGTGATCGTCTTCCCAGTCAAAGTCTTGACGAATATTTGCAT 1205090 >seq2164 Length=10083965 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | ||| | |||| || ||||| || || |||||||||||| Sbjct 642641 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCT 642582 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||| ||||| || || |||| |||||||| || || || || Sbjct 642581 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 642522 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||||||||| || || ||| | | || | ||||||| || ||| ||| Sbjct 642521 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCGATGGTGTCCGAGGATTCGACT 642462 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||| ||||| || ||||| Sbjct 642461 TCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 642415 >seq1717 Length=9716283 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || ||||| || || ||||||||||| | ||| || ||||| Sbjct 1668538 ACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 1668597 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| |||| | ||||| ||||| || || |||||||||||||| Sbjct 1668598 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 1668657 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || ||| | | || | ||||| | | ||| || || | || | || || Sbjct 1668658 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACCTCTAAGGTTATGGTTTTT 1668717 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | ||||| ||||| || |||||| Sbjct 1668718 CCAGTTAGGGTTTTCACGAAAATCTGCATA 1668747 >seq3320 Length=4692610 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||||| || ||||| || || || |||||||| | ||| || ||||| | ||| Sbjct 1079723 ATGAAGCGTCGATTCCTTCTGAATTTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTG 1079664 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||| |||||| |||| | ||||| ||||| || || |||||||||||||| || || Sbjct 1079663 TTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTT 1079604 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 ||| | | || | ||||||| | ||| ||||| | || | || || || || Sbjct 1079603 GGTTTTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGGGTTATGGTTTTCCCAGT 1079544 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 1079543 TAGGGTTTTCACGAAAATCTGCAT 1079520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506992306847520