Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq530 104 2e-17 seq3251 100 2e-16 seq607 100 2e-16 seq374 93.3 4e-14 seq863 89.7 4e-13 >seq530 Length=4616287 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | ||||| ||| | || ||||||||||| ||||||||||||| Sbjct 1165836 TTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCG 1165895 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | ||||| ||||| || || ||| |||| | |||||||| || || Sbjct 1165896 CAAGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 1165955 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||| || ||||| ||| ||| || || | | ||| || || | || ||| Sbjct 1165956 GGATGCCTTCCTTGTCCTGAATCTTCGCCTTAACATTGTCGATGGTGTC-CGAGCTCTCA 1166014 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 |||| ||| ||||| || || || || || ||||| ||||| |||||| Sbjct 1166015 ACCTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 1166065 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || |||||||| || || ||||| || || | ||| | | ||||| Sbjct 1166539 CACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTC 1166598 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || || | || || || ||||| || ||| | || || ||||| Sbjct 1166599 GAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCTTG 1166658 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT-TTCGACGGTAATGGTTT 19010 |||||| || || | | | | || ||| || | || ||||| ||| || || | Sbjct 1166659 AATTTTGGCCTTGACGTTGTCAATGGTGTCGG-AGCTTTCGACTTCGAGGGTGATTGTCT 1166717 Query 19011 TACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | |||||||| |||||||||||||| |||||| Sbjct 1166718 TTCCTGTTAAGGTTTTGACAAAAATCTGCATT 1166749 >seq3251 Length=7052893 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | ||||| | ||||| |||||| ||||| ||||| |||||||||||||| ||| Sbjct 3480711 CCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGCC 3480770 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| || || ||| | || || |||||||| || || Sbjct 3480771 AATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGA 3480830 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GC--TC 18990 | ||||| ||||| ||| || ||| || || | ||| ||| | ||| || || Sbjct 3480831 ATTCCCTCCTTGTCCTGAATCTT-TGTCTTAACGTTATCGATAGT---GTCAGAGCTTTC 3480886 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | ||| || || ||||| ||||| Sbjct 3480887 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3480937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 |||||||||||||| || ||||| || || | ||| || | || |||| ||| ||||| Sbjct 3481197 GTAGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGCTTACCA 3481256 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | || || |||||||| ||| || | ||||| || || |||||| || Sbjct 3481257 GCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTGGTCTTG 3481316 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | |||||| || |||| |||| ||| ||||| || || || | ||| Sbjct 3481317 ACATTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTT 3481376 Query 19025 TTGACAAAAATTTGCAT 19041 || ||||| |||||||| Sbjct 3481377 TTCACAAAGATTTGCAT 3481393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || |||||||| || |||||||| |||| || || | |||||| Sbjct 3480501 ACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 3480560 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | |||| |||||||| || || | |||||| || || | Sbjct 3480561 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 3480620 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | | | ||||| || ||| | ||| |||||||| Sbjct 3480621 ATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTTTTC 3480680 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || || ||||| ||||| Sbjct 3480681 CCAGTAAGAGTCTTAACGAAAATCTGCAT 3480709 >seq607 Length=2562756 Score = 100 bits (110), Expect = 2e-16 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||||| | ||| | |||||| ||||| ||||| || ||||||||||| ||| Sbjct 507704 CCTCCTCTCAACCGGAGCACTAGGTGCAAAGTAGATTCCTTCTGGATATTGTAATCAGCC 507645 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| || || ||| | || || |||||||| || || Sbjct 507644 AATGTCCGGCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 507585 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGT-TTTACCTGGCCGACAGTATCGCCAG-GC--TC 18990 | ||||||||||| ||| || ||| || || | ||| ||| | ||| || || Sbjct 507584 ATTCCCTCTTTGTCCTGAATCTT-TGTCTTAACGTTATCGATAGT---GTCAGAGCTTTC 507529 Query 18991 CGTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| |||||||| || || | ||| || || ||||| ||||| Sbjct 507528 AACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 507478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| || || |||||||| || |||||||| |||| || || | |||||| Sbjct 507914 ACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 507855 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || || ||| | |||| |||||||| || || | |||||| || || | Sbjct 507854 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 507795 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || ||| || || | | | | ||||| || ||| | ||| |||||||| Sbjct 507794 ATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTTTTC 507735 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 507734 CCAGTAAGCGTCTTAACAAAGATTTGCAT 507706 >seq374 Length=4160932 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 ||||||| | ||| | | ||||| ||| | || ||||||||||| || |||||||||| Sbjct 3966199 TTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCCG 3966140 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || | | || |||||||| || || ||| |||| | |||||||| || || Sbjct 3966139 CAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 3966080 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | ||| || ||||| ||| || || || | | ||| || || | ||| Sbjct 3966079 GGATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCCGAACTCTCAA 3966020 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||||||| || || || || || ||||| ||||| ||||| Sbjct 3966019 CCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 3965971 >seq863 Length=2839217 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || ||||||||||| || | || | ||||| ||||| || || Sbjct 2112290 GTTGACTCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCA 2112231 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | ||||||||||| ||| | ||||| ||||| |||||| || Sbjct 2112230 GCAAAGATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTA 2112171 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||| ||| ||| || | ||||| || || |||||||||||| Sbjct 2112170 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTT 2112111 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 2112110 TTCACAAAAATTTGCAT 2112094 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/201 (70%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || || |||||||| || | || | ||||| ||||| || || Sbjct 2111834 GTTGACTCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCA 2111775 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||||||| ||| | || |||||||| ||| || || Sbjct 2111774 GCAAAGATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTCCTGAATCTTGGTCTTA 2111715 Query 18965 ACCTGGCCGACAGTATCGCCAG-GC--TCCGTTTCGACGGTAATGGTTTTACCTGTTAAA 19021 || | | ||||||| | ||| || || || | |||||| ||||| ||||| ||| Sbjct 2111714 ACATTGTCGACAGT---GTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAA 2111658 Query 19022 GTTTTGACAAAAATTTGCATT 19042 || || ||||| ||||||||| Sbjct 2111657 GTCTTTACAAAGATTTGCATT 2111637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414555186615484