Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq607 98.7 6e-16 seq3251 95.1 8e-15 seq1717 87.8 1e-12 seq863 84.2 1e-11 >seq607 Length=2562756 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| ||||| | ||| | ||||| || || || || || ||||||||||||| | Sbjct 507704 CCTCCTCTCAACCGGAGCACTAGGTGCAAAGTAGATTCCTTCTGGATATTGTAATCAGCC 507645 Query 33203 AAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGT 33262 || | | |||||||| ||||| || ||| || | | |||||||| | || Sbjct 507644 AATGTCCGGCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 507585 Query 33263 ATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAAC 33321 || || ||||| || |||| ||| ||| ||| | || ||||| | || ||| Sbjct 507584 ATTCCCTCTTTGTCCTGAATC-TTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAAC 507526 Query 33322 GTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || || |||||||| || ||||| || |||||||| ||||| Sbjct 507525 TTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 507478 >seq3251 Length=7052893 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||| || || ||||| | ||||| ||||| || || || || || ||||||||||||| Sbjct 3480710 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 3480769 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 ||| | | |||||||| ||||| || ||| || | | |||||||| | || Sbjct 3480770 CAATGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTGG 3480829 Query 33262 TATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTT-TGAATCGTGTCGTTGGGTTGAA 33320 || || || || || |||| ||| ||| ||| | || ||||| | || || Sbjct 3480830 AATTCCCTCCTTGTCCTGAATC-TTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 3480888 Query 33321 CGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | ||||| || || |||||||| || ||||| || |||||||| ||||| Sbjct 3480889 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3480937 >seq1717 Length=9716283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG-TCAT 33218 ||||||||| | ||||| || || || || |||||||| | ||| | || || | Sbjct 1668537 CACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTG-CAAGTGTTCTTCCATCTT 1668595 Query 33219 CCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGC 33278 ||||||| || ||| ||| ||||| ||||| || || | || ||||||||||| || Sbjct 1668596 CCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTT 1668655 Query 33279 TAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTT 33338 ||| ||| || | | || |||||| | || || || | ||||| |||| Sbjct 1668656 GGATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACCTCTAAGGTTATGGTTT 1668715 Query 33339 TTCCCGTAAGAGTTTTTACGAAAATTTGCATGTTT 33373 |||| || || ||||| |||||||| ||||| ||| Sbjct 1668716 TTCCAGTTAGGGTTTTCACGAAAATCTGCATATTT 1668750 >seq863 Length=2839217 Score = 84.2 bits (92), Expect = 1e-11 Identities = 165/241 (68%), Gaps = 10/241 (4%) Strand=Plus/Minus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || |||| |||||| || | || ||||| ||||| ||||| Sbjct 2112558 AATCTGCATCCCTCCTCTCAAGCGCAGCACCAAGTGAAGGGTAGACTCCTTTTGGATATT 2112499 Query 33193 GTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 |||||| | ||| | || ||||| | ||||| || ||| || || | || Sbjct 2112498 GTAATCCG-CAA---GGGTCCTCCCATCATCAAGCTGCTTCCCGGCAAAGATCAACCTTT 2112443 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGT 33308 ||||||||| || |||||||| || || |||| ||| || | | ||| |||| Sbjct 2112442 GCTGGTCCGGAGGAATGCCTTCCTTATCCTGAATCTTGGCTTTGACATTATCAATAGTGT 2112383 Query 33309 CGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCA 33368 | | | ||| |||| ||| || || || || || | ||| || || |||||||||| Sbjct 2112382 CAGAGCTCTCAACCTCCAAAGTGATAGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCA 2112323 Query 33369 T 33369 | Sbjct 2112322 T 2112322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318764056534428