Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2087 187 2e-42 seq1371 156 4e-33 seq3481 87.8 2e-12 seq448 87.8 2e-12 >seq2087 Length=2955978 Score = 187 bits (206), Expect = 2e-42 Identities = 572/867 (66%), Gaps = 28/867 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||||||||| ||| ||||| || | |||||| || ||||| || || || || | Sbjct 718697 TTGACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCC 718756 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA--TAGTATTTTTT 12960 ||| | || || ||||| ||||||| || || | |||| || |||| Sbjct 718757 CTTGAAGAGAGATCAACTCCATCCAATCGAATGGGTTCT--GAACTCCGTAAACCTTTTC 718814 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 ||||| | | |||| |||||| ||||||||||| |||||||| |||| | || Sbjct 718815 GCACCCGAGCGCAGCCAACAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTC 718874 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||||||||| || | | || || || | || || |||| || | | || ||||| Sbjct 718875 ACAGTTCATCCCAACCAGCTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATC 718934 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGAT--AG-AT 13136 ||||| || | ||||| | || | || ||||| | | || | | | || | Sbjct 718935 GACTGCATCCTTCACTAT-CCCCTGA--ACCTTCTCCACACTCAGCTTCTTCTTCAGTAA 718991 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 || | ||| || ||| ||||| ||||| || | ||||| |||| ||| ||||||| Sbjct 718992 GC-TGTACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGT 719050 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACG 13256 | || || |||| ||||||||| ||||| || ||||||| ||| || || | |||||| Sbjct 719051 TCGAGAAGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGAT-GGAGCAAAAA 719109 Query 13257 AACCC-GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 ||| || || || || |||||||| ||||| || || ||||| ||| || ||| Sbjct 719110 CTCCCGGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACG-- 719167 Query 13316 CTATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 ||| || || ||||| ||||| | || || | ||||| || || Sbjct 719168 --ATTCAGCACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGAT 719225 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | |||| ||||| ||| | || |||| ||| ||| |||||||| |||| Sbjct 719226 AGTTTCAATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTA- 719284 Query 13435 CAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAAC 13493 || ||| | |||||||| || ||||| ||||| || || |||||||| ||||| ||| Sbjct 719285 AAAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAG 719344 Query 13494 ATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTA 13553 | ||| || | ||||| || || |||||| | || | || ||| ||||| Sbjct 719345 CGCGAGCTTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTA 719404 Query 13554 TCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGT-----T 13608 | |||||| || || || || || || ||||| | || || | | ||||| Sbjct 719405 TGCCGTCAGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGG 719464 Query 13609 TTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCA 13668 || ||| || ||| | ||| ||||| || | ||| || || || | ||||| Sbjct 719465 TTAAGAC--GGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCA 719522 Query 13669 AAAAGAAGCAACAGCCTTCTTATACAT 13695 || ||||| |||| || || ||||| Sbjct 719523 GAATGAAGCTTCAGCTTTTTTGTACAT 719549 >seq1371 Length=8752182 Score = 156 bits (172), Expect = 4e-33 Identities = 566/866 (65%), Gaps = 26/866 (3%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||||||||| ||| ||||| || | |||||| || ||||| || || || || | Sbjct 1699876 TTGACATAACAGAAGCTTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCC 1699935 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAA--TAGTATTTTTT 12960 ||| | || || ||||| ||||||| || || | |||| || |||| Sbjct 1699936 CTTGAAGAGAGATCAACTCCATCCAATCGAACGGGTTCT--GAACTCCGTAAACCTTTTC 1699993 Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 |||||| | | | |||| || || ||||||||||| |||||||| |||| | || Sbjct 1699994 ACACCCAAGTGCAGCCAACAGCCTATCTGCAACAAACTCAATGTACTGACTCATCAGCTC 1700053 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 ||||||||| || | | || || || | || || |||| || | | || || || Sbjct 1700054 ACAGTTCATCCCAACCAGCTTCACCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTC 1700113 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTA-ATGGAGGATTTGAT--AG-AT 13136 ||||| || ||||||| | || || ||||| | | || | | | || | Sbjct 1700114 GACTGCATCCTTAACTAT-CCCCT--GCACCTTCTCAACACTCAGCTTCTTCTTCAGTAA 1700170 Query 13137 GCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGT 13196 || | | | || || |||||||||||||| | ||||| |||| ||| ||||||| Sbjct 1700171 GC-TGTATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGT 1700229 Query 13197 TTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATAT--AGCAGCAAA 13254 | || || |||| || ||||| | ||| || ||||| | ||| || || ||||| ||| Sbjct 1700230 TCGAGAAGGTTAATCCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAG-AAA 1700288 Query 13255 CGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGT 13314 | || || || || || |||||||| ||||| || || ||||| ||| || ||| Sbjct 1700289 C-TTCCAGAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACG- 1700346 Query 13315 ACTATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCA 13373 ||| || || ||||| ||||| | || || | ||||| || | Sbjct 1700347 ---ATTCAGCACCATCAATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGA 1700403 Query 13374 TATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTA 13433 || |||| ||||| ||| | || |||| ||| ||| || ||||| |||| Sbjct 1700404 TAGTTTCAATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTA 1700463 Query 13434 TCAATAAGCTA-TACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || ||| | |||||||| || ||||| ||||| || || |||||||| ||||| ||| Sbjct 1700464 -AAAGAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAA 1700522 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 | ||| || | |||||||| || |||||| | || | || ||| ||| Sbjct 1700523 GCGCGAGCTTCAGCAACCTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACG 1700582 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAAT-AAAt--tttttttCGTTT 13609 || ||||| || || || || || || ||||| | || |||| | || ||| | Sbjct 1700583 ATGCCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTG 1700642 Query 13610 TCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 | | | || ||| | ||| ||||| || | ||| || || || | ||||| Sbjct 1700643 GTTAAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAG 1700702 Query 13670 AAAGAAGCAACAGCCTTCTTATACAT 13695 || ||||| |||| || || ||||| Sbjct 1700703 AATGAAGCTTCAGCTTTTTTGTACAT 1700728 >seq3481 Length=11062796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| |||||||||||||| | ||||| || || ||| |||||||||||| | |||| Sbjct 10815768 ACAGGCAAAATCACAGTGTAGGCCTTCGTCCCTTGATATAAGCTCGTTTGAATAAGTTAA 10815709 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||||| | |||| ||||||| ||||||||| ||| |||| Sbjct 10815708 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 10815665 >seq448 Length=4822964 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13150 ACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAG 13209 ||| |||||||||||||| | ||||||||||| ||| |||||||| || | |||| Sbjct 2891979 ACAGGCAAAATCACAGTGTAGGCCTTCATCTCTTGATATAAGCTCGTTCGAGTAAGTTAA 2891920 Query 13210 ACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAA 13254 ||| ||||| | |||| ||||||| ||||||||| ||| |||| Sbjct 2891919 ACCAGGCATCATGCCTCTCTTTTTAAGCCAAAATATGGCA-CAAA 2891876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430964089443372