Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq530 104 2e-17 seq374 104 2e-17 seq3251 100 2e-16 seq607 95.1 1e-14 seq2 87.8 2e-12 >seq530 Length=4616287 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| | ||| || ||| |||||| || |||||||| |||||| Sbjct 1166066 CCTCCCCTCAAACGGAGCACCAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCC 1166125 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| || |||| || | |||||| || || Sbjct 1166126 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 1166185 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| ||| || ||| | | | ||||| |||| ||| | Sbjct 1166186 ATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 1166245 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | |||||||| || || || ||||| || || ||||||||||| Sbjct 1166246 TCCAAAGTTATGGTCTTCCCAGTAAGAGTCTTGACGAAAATCTGCAT 1166292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || ||||| || ||||||||| || |||||||| || Sbjct 1165838 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGC- 1165896 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || ||||| |||||||| ||| | |||| || | |||||| || || Sbjct 1165897 AAGAGTCCTTCCATCCTCAAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 1165956 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| ||| ||| | | | ||||| || | ||| Sbjct 1165957 GATGCCTTCCTTGTCCTGAATCTTCGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAAC 1166016 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || ||||| || ||||| | || || || ||||||||||| Sbjct 1166017 CTCGAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 1166064 >seq374 Length=4160932 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| ||||| || ||| |||||| || |||||||| || ||| Sbjct 3965969 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 3965910 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 || || | ||||| ||||||||||| || |||| || | |||||| || || Sbjct 3965909 AAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGG 3965850 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || |||||||||| ||| || ||| | | | ||||| |||| ||| | Sbjct 3965849 ATACCTTCCTTGTCCTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACC 3965790 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | || ||||| || ||||| || || ||||| ||||||||||| Sbjct 3965789 TCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTCACGAAAATCTGCAT 3965743 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| |||||||||||| |||||| || |||||||| |||| ||| || ||| | || | Sbjct 3965724 CACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGGGTGCGCCCATCTT 3965666 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || | || || | |||||| || || | || |||||||| Sbjct 3965665 CGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTGTCTT 3965606 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGT 48693 ||| || ||||| | | || ||||||| || ||| || | |||| || ||||| Sbjct 3965605 GAATCTTAGCCTTGACATTGTCAATAGTATCGG-AG-CTCTCGACTTCGAGGGTGATGGT 3965548 Query 48694 TTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || |||||||| || ||||| || ||||| Sbjct 3965547 CTTCCCAGTGAGAGTCTTGACAAAGATTTGCAT 3965515 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | ||| | | ||| || ||||| || ||||||||| ||||||||||| || Sbjct 3966197 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCCGC- 3966139 Query 48560 AATTGTCGCTCG-TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || ||| || || ||||||||||| ||| | |||| || | |||||| || || Sbjct 3966138 AAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGG 3966079 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||||||| ||| || ||||| | | ||||| || | | ||| Sbjct 3966078 GATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCCGAACTCTCAAC 3966019 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || ||||| || ||||| | || || || |||||||||||| Sbjct 3966018 CTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCATC 3965970 >seq3251 Length=7052893 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || || || ||||||||| |||||||| ||||| | || | || ||| Sbjct 3481185 ACTAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 3481244 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||||||| || | || | | |||||| ||| || | || ||||| ||| | Sbjct 3481245 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGA 3481304 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | | || ||||| | || |||| ||||| || ||||| || Sbjct 3481305 ATTTTGGTCTTGACATTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTCTTG 3481364 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||| || |||||| Sbjct 3481365 CCAGTCAGGGTTTTCACAAAGATTTGCATC 3481394 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||||||||||||||||||||||||| ||| | ||||||| ||||| || | | Sbjct 3480290 CTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCAGCAAA 3480349 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| || || | || ||||||||| ||| || ||| | | Sbjct 3480350 GATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTAGTCTTCACATT 3480409 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||| | || ||| ||||| || || || || |||||||| || ||||| Sbjct 3480410 CTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCGGTGAGGGTCTTCAC 3480469 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 3480470 AAAGATCTGCAT 3480481 >seq607 Length=2562756 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 ||||| || || ||| ||||||||| |||||||| ||||| | || | || ||| Sbjct 507230 ACTAAGTGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCC 507171 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 | ||||||||| || | || | | |||||| ||| || | || ||||| || | Sbjct 507170 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCTTGA 507111 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 ||||| ||||| | | | || || || | || ||| ||||| |||||||| || Sbjct 507110 ATTTTGGTCTTGACATTCTCAATAGTGTCAGAAGTCTCGACCTCGAGGGTTATGGTCTTC 507051 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || || ||||||||||| || |||||| Sbjct 507050 CCAGTCAGGGTTTTCACAAAGATTTGCATC 507021 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| |||||||||||||||||||| ||| | ||||||| ||||| || | | Sbjct 508125 CTCCTTCTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAA 508066 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | | |||||| || || | || ||||||||| ||| || ||| | | Sbjct 508065 GATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGTCTTCACATT 508006 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || ||||| | || ||| ||||| || || || || || ||||| || ||||| Sbjct 508005 CTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTCAC 507946 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 507945 GAAGATCTGCAT 507934 >seq2 Length=8241039 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/193 (72%), Gaps = 5/193 (3%) Strand=Plus/Plus Query 48537 CCTTT-TGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||||| || ||||||||||| || || || || ||||| || |||||||| ||| || | Sbjct 3865210 CCTTTCTGGATGTTGTAATCGGC-AAGAGTACGGTCGTCTTCAAGCTGCTTTCCGGCGAA 3865268 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || |||||||| ||||| | | | ||| ||||| ||||| ||||| | Sbjct 3865269 GATGAAACGCTGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGAC-GT 3865327 Query 48655 CGCTA-TGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | || ||||||| ||| || ||| | || ||||||||||| || |||||||||| Sbjct 3865328 TGTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCA 3865387 Query 48714 CAAAAATCTGCAT 48726 |||| || ||||| Sbjct 3865388 CAAATATTTGCAT 3865400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421233302879486