Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq844 143 4e-30 seq481 141 1e-29 seq2655 138 2e-28 seq1494 138 2e-28 seq1717 132 8e-27 seq972 127 3e-25 seq1367 111 2e-20 seq1001 111 2e-20 seq1080 109 9e-20 seq1752 102 1e-17 seq2797 93.3 7e-15 >seq844 Length=2987166 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| | | |||||| |||||||||||||| ||||| |||||||| || Sbjct 2195288 CGCAAAGCGTCACAGGAAGGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCAGCCAT 2195229 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||| | ||||| || |||||| | ||| | |||||||||| | Sbjct 2195228 TCGTCGATTGGCTCGAAGAGGTGGTGTGAAGCGTATTAGTGGTCTTATCTATGAAGAAAC 2195169 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| |||| | |||||||| || ||| || || | ||||||| | || || || Sbjct 2195168 TCGTGGTGTTCTTAAGATCTTTCTAGAGAATGTGATTCGTGATGCTGTTACTTACACTGA 2195109 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || | | |||||||| || | |||||| | |||||||| | || | || || Sbjct 2195108 GCATGCCAGGAGGAAGACTGTTACTGCTATGGATGTTGTCTATGCTCTTAAGAGGCAGGG 2195049 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | || ||||| ||| |||| Sbjct 2195048 TCGTACTCTCTACGGTTTCGGAGGTTA 2195022 >seq481 Length=3673909 Score = 141 bits (156), Expect = 1e-29 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || | Sbjct 2013405 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 2013346 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || | |||||||||||| ||||| |||||||||||| || | Sbjct 2013345 TTAAGAGGATCAGCGGCCTCATCTATGAAGAGACTCGTGGTGTTTTGAAGATATTTTTGG 2013286 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | || |||||||||||| |||||||| || || Sbjct 2013285 AGAATGTCATCAGGGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTTACTG 2013226 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | || || || | || | |||||||||| ||||||||||||| ||| Sbjct 2013225 CTATGGATGTTGTGTACGCTCTTAAGAGGCAAGGCCGTACTCTTTATGGTTTTGGTGGTT 2013166 Query 16698 A 16698 | Sbjct 2013165 A 2013165 Score = 138 bits (152), Expect = 2e-28 Identities = 175/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||| ||||| || || ||||| ||||| || || |||||||| |||||||| || || | Sbjct 2028026 GAGACAACATTCAGGGTATCACTAAGCCCGCCATTCGTCGTCTTGCTCGTCGAGGCGGTG 2027967 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || | |||||||||||| ||| | |||||||||||| || | Sbjct 2027966 TTAAGAGGATCAGCGGCCTCATCTATGAAGAGACTCGCGGTGTTTTGAAGATATTTTTGG 2027907 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || ||| |||||| | || |||||||||||| |||||||| ||||| Sbjct 2027906 AGAATGTCATCAGAGATGCTGTTACTTACACCGAGCACGCTCGCCGTAAGACGGTCACTG 2027847 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 | |||||| | |||||||| | || | || ||||| | |||| |||||||| ||| Sbjct 2027846 CTATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGCACTCTTTACGGTTTTGGTGGTT 2027787 Query 16698 A 16698 | Sbjct 2027786 A 2027786 >seq2655 Length=3838003 Score = 138 bits (152), Expect = 2e-28 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || || ||||| ||||||| || |||||||| Sbjct 2385599 GATAACATCCAAGGTATCACTAAACCCGCCATTCGTCGGTTGGCTCGGCGAGGTGGAGTT 2385540 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | |||||||||| ||| | |||||||||||| ||| | || Sbjct 2385539 AAGAGGATTAGCGGGCTTATTTATGAAGAGACTCGCGGTGTTTTGAAGATATTCTTGGAG 2385480 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| || || || ||||||||| ||||||||||| || | Sbjct 2385479 AATGTGATTAGAGATGCTGTCACTTACACTGAGCACGCTCGTCGTAAGACTGTTACTGCT 2385420 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| |||| |||||||| |||| Sbjct 2385419 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTTA 2385361 >seq1494 Length=5234089 Score = 138 bits (152), Expect = 2e-28 Identities = 190/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| |||||||||||||| ||||| ||||| ||||| Sbjct 1475303 GCAAAGCGTCACAGGAAAGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCTGCTATT 1475244 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || |||||| || || || |||||||||||| Sbjct 1475243 CGTCGTCTTGCTCGAAGAGGCGGTGTTAAGCGTATCAGCGGTCTGATCTATGAAGAGACA 1475184 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | ||||||||| | ||| || || | ||||||| | || || ||| Sbjct 1475183 CGTGGCGTCCTCAAGATCTTCTTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAG 1475124 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || |||||||| | || ||||| | || | ||||| Sbjct 1475123 CATGCGAGGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCTCTCAAGAGGCAAGGA 1475064 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||||||||| || |||| Sbjct 1475063 AGGACTCTTTATGGTTTCGGTGGTTA 1475038 >seq1717 Length=9716283 Score = 132 bits (146), Expect = 8e-27 Identities = 189/266 (71%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| | | | |||||| ||||||||||||||||| || ||||| ||||| Sbjct 8810569 GCAAAGCGTCACAGGAAAGTTCTTCGTGATAACATCCAAGGAATTACGAAGCCTGCTATT 8810510 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| ||||| | || || || |||||| || ||| || |||| ||||||| Sbjct 8810509 CGTCGTCTTGCTCGAAGAGGCGGTGTTAAGCGTATCAGTGGTCTGATCTACGAAGAGACA 8810450 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || | |||||||| | ||| || || | ||||||| | || || ||| Sbjct 8810449 CGTGGCGTCCTTAAGATCTTTTTGGAGAATGTGATTCGTGATGCTGTGACTTACACTGAG 8810390 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 || || | | ||||| || || |||||||| | || ||||| | || | ||||| Sbjct 8810389 CATGCGAGGAGGAAGACGGTGACTGCCATGGATGTTGTGTATGCTCTCAAGAGGCAAGGA 8810330 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | |||||||||| || |||| Sbjct 8810329 AGGACTCTTTATGGTTTCGGTGGTTA 8810304 >seq972 Length=6313176 Score = 127 bits (140), Expect = 3e-25 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || ||||| ||||| || || || ||||| |||||||| || || || Sbjct 164940 GACAACATTCAGGGTATCACTAAGCCTGCCATTCGCCGTCTTGCTCGTCGAGGCGGTGTT 164881 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || || |||| ||||| | ||| | |||||||||||| || | || Sbjct 164880 AAGAGGATCAGCGGCCTGATCTACGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGGAG 164821 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||| |||||| | ||| |||||||| ||| |||||||| || || | Sbjct 164820 AATGTTATCAGGGATGCTGTTACCTACACCGAGCATGCTCGCCGTAAGACGGTTACTGCT 164761 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | |||||||| | || | || ||||||| |||| |||||||| ||||| Sbjct 164760 ATGGACGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTTAA 164701 Score = 125 bits (138), Expect = 1e-24 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||| || || ||||| ||||| || || || ||||| |||||||| || || || Sbjct 136592 GACAACATTCAGGGTATCACTAAGCCTGCCATTCGCCGTCTTGCTCGTCGAGGCGGTGTT 136533 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || || |||| ||||| | ||| | |||||||||||| || | || Sbjct 136532 AAGAGGATCAGCGGCCTGATCTACGAAGAAACTCGCGGTGTTTTGAAGATATTTTTGGAG 136473 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||| |||||| | ||| |||||||| ||| |||||||| || || | Sbjct 136472 AATGTTATCAGGGATGCTGTTACCTACACCGAGCATGCTCGCCGTAAGACGGTTACTGCT 136413 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| | |||||||| | || | || ||||||| |||| |||||||| |||| Sbjct 136412 ATGGACGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTTTACGGTTTTGGTGGTTA 136354 >seq1367 Length=42055 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || ||||| || ||||||| || || || || Sbjct 12875 GATAACATCCAAGGGATCACAAAACCCGCCATCCGCCGGTTGGCTCGGCGAGGAGGGGTT 12816 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | ||||| || | ||| | |||||||||||| ||| | || Sbjct 12815 AAGAGGATAAGCGGTCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 12756 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| |||||| || || || ||||| ||| |||||||| || || | Sbjct 12755 AATGTTATTAGAGATGCTGTCACTTACACTGAGCATGCTCGCCGTAAGACGGTTACAGCT 12696 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | || ||||||| ||||||| ||||| |||| Sbjct 12695 ATGGATGTTGTTTATGCTCTTAAGAGACAGGGCCGTACTCTTTATGGCTTTGGTGGTTA 12637 >seq1001 Length=3632939 Score = 111 bits (122), Expect = 2e-20 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || ||||| || ||||||| || || || || Sbjct 180874 GATAACATCCAAGGGATCACAAAACCCGCCATCCGCCGGTTGGCTCGGCGAGGAGGGGTT 180933 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | ||||| || | ||| | |||||||||||| ||| | || Sbjct 180934 AAGAGGATAAGCGGTCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 180993 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||||| |||||| || || || ||||| ||| |||||||| || || | Sbjct 180994 AATGTTATTAGAGATGCTGTCACTTACACTGAGCATGCTCGCCGTAAGACGGTTACAGCT 181053 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | || ||||| | || | || ||||||| ||||||| ||||| |||| Sbjct 181054 ATGGATGTTGTTTATGCTCTTAAGAGACAGGGCCGTACTCTTTATGGCTTTGGTGGTTA 181112 >seq1080 Length=1991253 Score = 109 bits (120), Expect = 9e-20 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| ||||| ||||| || || || || || ||| ||||||| || || || || Sbjct 97896 GATAACATTCAAGGTATCACTAAACCCGCCATTCGCCGTTTGGCTCGGCGAGGAGGGGTT 97955 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | | || | | ||||| || | ||| | |||||||||||| ||| | || Sbjct 97956 AAGAGGATAAGCGGTCTTATTTATGAGGAAACTCGCGGTGTTTTGAAGATATTCTTGGAG 98015 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||| |||||| | || || ||||| ||| |||||||| || || | Sbjct 98016 AATGTTATCAGAGATGCTGTTACTTACACTGAGCATGCTCGGCGTAAGACGGTTACTGCT 98075 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| | || | |||||||||| ||||||| || || ||||| Sbjct 98076 ATGGATGTTGTTTATGCTCTTAAGAGACAAGGCCGTACTCTTTATGGGTTCGGTGGTTAA 98135 >seq1752 Length=8334331 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || || |||||| |||| | || || |||||| Sbjct 2685882 GATAACATCCAAGGTATCACTAAACCCGCCATTCGTCGTTTGGCGAGGCGAGGAGGAGTC 2685941 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || | | || || || | ||| | ||| |||||||| || | || Sbjct 2685942 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGCGGTGTATTGAAGATATTTTTGGAG 2686001 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | || || ||||||||| ||||||||||| || | Sbjct 2686002 AATGTGATTAGAGATGCTGTTACTTACACTGAGCACGCTCGTCGTAAGACTGTTACTGCT 2686061 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| | || || ||||| |||| Sbjct 2686062 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 2686120 >seq2797 Length=8186616 Score = 93.3 bits (102), Expect = 7e-15 Identities = 164/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| || || || || ||||| | || | || |||||||| Sbjct 4345092 GATAACATCCAAGGTATCACTAAACCCGCCATTCGTCGCTTAGCGAGGCGAGGTGGAGTT 4345151 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||| | || || | | || || || | ||| | ||| |||||||| || | || Sbjct 4345152 AAGAGGATCAGCGGCCTTATTTACGAGGAAACTCGCGGTGTATTGAAGATATTTTTGGAG 4345211 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || |||||| | ||| || ||||| ||| ||||||||||| || | Sbjct 4345212 AATGTGATTAGAGATGCTGTTACCTACACTGAGCATGCTCGCCGTAAGACTGTTACTGCT 4345271 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 |||||| | |||||||| | || | || ||||||| | || || ||||| |||| Sbjct 4345272 ATGGATGTTGTCTATGCTCTTAAGAGGCAGGGCCGTACTCTCTACGGGTTTGGTGGTTA 4345330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79072012725798