Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2087 228 1e-54 seq1371 215 6e-51 >seq2087 Length=2955978 Score = 228 bits (252), Expect = 1e-54 Identities = 421/611 (69%), Gaps = 15/611 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || ||| || || || || || || || ||||||| || || ||||| || | Sbjct 718997 ACAACAGACAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGA 719056 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | || | || |||||||| ||||||||||||||||| || ||||| || || ||| | Sbjct 719057 AGGTTAAACCCGGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCG 719115 Query 33416 AA-AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGC 33470 | ||||| || ||||| || |||||| ||||| | ||||| || ||| | || Sbjct 719116 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGC 719174 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 | ||| ||||| |||||||||| |||||||| || |||||||| || ||||| Sbjct 719175 ACCATCA---ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTC 719231 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 || ||| ||| |||| | |||| ||| |||||| | |||||| || | | ||| Sbjct 719232 AATTGCACGAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAG 719291 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 | |||||||| || ||||||||||||||||| || || || || |||||| | ||| Sbjct 719292 AGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGC 719351 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 || | || ||| || ||| | |||| | | || | ||| || ||||| ||||| Sbjct 719352 TTCAGCAACCTGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTC 719411 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---- 33766 | || || || || || | | || | || |||| | |||||| | |||| Sbjct 719412 AGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGAC 719471 Query 33767 GTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATG 33826 | || | ||| | | | ||||| || | ||| |||||||| | ||||| ||||| | Sbjct 719472 GGTT-TCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAG 719530 Query 33827 CCTCTGCCTTTTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATC 33886 | || || ||||| ||||| | |||||| | |||| |||||||| ||| |||| Sbjct 719531 CTTCAGCTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATC 719590 Query 33887 TATTTGGATTT 33897 ||| ||| ||| Sbjct 719591 TATCTGGGTTT 719601 >seq1371 Length=8752182 Score = 215 bits (238), Expect = 6e-51 Identities = 411/601 (68%), Gaps = 11/601 (2%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || ||||| ||||| || || ||||||| || || ||||| || || || | | Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 || ||||| | ||||||||||| ||||| || ||||| ||| |||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAA 1700303 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATG 33479 || ||||| || |||||| ||||| | ||||| || ||| | || | ||| Sbjct 1700304 ATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGATTCAGCACCATCA-- 1700360 Query 33480 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33539 ||||| |||||||||| |||||||| || |||||||| || ||||| || ||| Sbjct 1700361 -ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 1700419 Query 33540 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33599 ||| |||| | |||| ||| |||||| | ||||| || | | |||| ||||| Sbjct 1700420 AAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACAT 1700479 Query 33600 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33659 ||| || ||||||||||||||||| || || || || |||||| | ||| || | || Sbjct 1700480 TTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAAC 1700539 Query 33660 CTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 ||| || || | |||| | | || | ||| || || || ||||| || || Sbjct 1700540 CTGAACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGC 1700599 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT--TATTCCA 33776 || || || | | || | || |||| | |||||| | ||| || | | | ||| Sbjct 1700600 GAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCA 1700659 Query 33777 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 | | | ||||| || | ||| |||||||| | ||||| ||||| || || || || Sbjct 1700660 GTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTT 1700719 Query 33837 TTTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATT 33896 ||| ||||| | |||||| | |||| |||||||| ||| ||||||| ||| || Sbjct 1700720 TTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTT 1700779 Query 33897 T 33897 | Sbjct 1700780 T 1700780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622920055075760