Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2390 113 4e-20 seq2164 113 4e-20 seq1717 107 2e-18 seq2618 104 2e-17 seq896 104 2e-17 seq3320 102 8e-17 seq607 89.7 5e-13 seq374 87.8 2e-12 >seq2390 Length=8026821 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | || ||||||| Sbjct 2843226 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 2843167 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| ||||| ||||||||||| || || || || Sbjct 2843166 TCGGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 2843107 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||||| || ||| ||||| |||||||||| | || | || |||||| Sbjct 2843106 CAACAACGTCTCATTTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 2843048 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || ||||| ||| | || || || || Sbjct 2843047 CAACATCCAGAAGGAATCGACTCTTCACCTTGTTCT 2843012 >seq2164 Length=10083965 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | ||| | ||||| Sbjct 642412 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 642471 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||||||||| | |||||| ||||| ||||||||||| || || || || Sbjct 642472 TCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 642531 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || ||| || Sbjct 642532 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGATTA 642590 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||||||| || ||||| ||| | || || || || Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCACCTTGTTCT 642626 >seq1717 Length=9716283 Score = 107 bits (118), Expect = 2e-18 Identities = 165/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||||||||| | || ||| | || | |||||| Sbjct 1668749 AATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCA 1668690 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 1668689 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1668630 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943 |||||| | | || | | || |||||| | ||||||| |||| || | || || | Sbjct 1668629 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 1668572 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | |||||||| || ||||| || | ||| |||| || ||||| | || || Sbjct 1668571 ACAACATTCAGAAGGAATCGACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 1668520 >seq2618 Length=3490594 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | || | ||||| Sbjct 3445358 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 3445299 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||||||||| || || || || Sbjct 3445298 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 3445239 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || |||||| Sbjct 3445238 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 3445180 Query 26945 TAACATTCAAAAAGAATCTAC 26965 ||||| || || || || || Sbjct 3445179 CAACATCCAGAAGGAGTCCAC 3445159 >seq896 Length=2616551 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || ||||| |||| || ||| | || ||| | ||| | ||||| Sbjct 1343146 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 1343205 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || ||| ||||| ||||||||||| || || ||||| Sbjct 1343206 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 1343265 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTA 26944 |||||| | ||||| | || ||| ||||| |||||||||| | || | || |||||| Sbjct 1343266 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 1343324 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| | || || || || Sbjct 1343325 CAACATCCAGAAGGAGTCGACTCTTCACCTTGTTCT 1343360 >seq3320 Length=4692610 Score = 102 bits (112), Expect = 8e-17 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| ||||||| ||| | || ||| | ||| | |||||| Sbjct 1079517 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 1079576 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | |||||| ||||| ||||||||||| || || || ||| Sbjct 1079577 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1079636 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA-ACGT-CAGCGACT 26943 |||||| | | || | | || |||||| | ||||||| |||| || | || || | Sbjct 1079637 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 1079694 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 | || ||||| || ||||| || | |||||||| || ||||| | || || Sbjct 1079695 ACAAAATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 1079746 >seq607 Length=2562756 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || |||| ||| | ||| | ||| | | Sbjct 507250 ATGCAGATCTTTGTCAAGACTCTTACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 507309 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || |||||| || ||||||||||| || || || || Sbjct 507310 GACACCATTGAGAATGTGAAGACAAAGATACAGGATAAAGAAGGGATCCCACCAGACCAG 507369 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || |||| || || || || || || |||| | | | | ||||||||| Sbjct 507370 CAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGTCGGACTCTTGCAGACTATAAC 507429 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || |||||| | ||| |||| || | | |||||||| Sbjct 507430 ATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGAGGAGG 507476 >seq374 Length=4160932 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | |||||||| | ||||| |||| | || | Sbjct 3965059 ATGCAAATCTTCGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTCGAGAGTTCC 3965118 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| ||||| ||||| ||||| || || || || || Sbjct 3965119 GACACCATTGACAATGTCAAGACTAAGATCCAAGACAAGGAAGGAATTCCCCCAGACCAG 3965178 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 ||||| || || | || ||| ||||| || || || | ||| | | ||| ||||| || Sbjct 3965179 CAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCT-AGCTGACTACAA 3965237 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| |||| || || || | || || ||||||| Sbjct 3965238 CATTCAAAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGGGGAGGAA 3965287 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478641542285920