Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1371 113 1e-19 seq2087 84.2 6e-11 >seq1371 Length=8752182 Score = 113 bits (124), Expect = 1e-19 Identities = 340/522 (65%), Gaps = 11/522 (2%) Strand=Plus/Minus Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAAC 22492 ||||||| ||||| |||||||| || ||||| | || || || || || Sbjct 1700394 TTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGA 1700335 Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552 | | ||||| |||||| |||||||| |||||||| |||||| || || | |||| Sbjct 1700334 GGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCT 1700275 Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612 | ||||| ||||| |||| | ||||| || |||| || || || ||| | || | Sbjct 1700274 TCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGCTGATATCGC 1700215 Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA-TCATTCAT 22671 |||| || || ||||| |||||||| || ||||||| | | || | | | Sbjct 1700214 GAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATACAG----CTTACTGAAGAAG 1700159 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731 || || ||| | || | | || ||| ||||||| ||| | || || Sbjct 1700158 AAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTTAAGGATGCAGTCGAAATCGAGCGAGAG 1700099 Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791 || | ||| ||| | || || | || |||| || || || |||||| Sbjct 1700098 TTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAG 1700039 Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851 || ||| | |||||||||||| | || || | |||| || | || |||| || || Sbjct 1700038 TACATTGAGTTTGTTGCAGATAGGCTGTTGGCTGCACTTGGGTGTGAAAAGGTTT---AC 1699982 Query 22852 GTCGTT---AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908 | ||| || || || || |||||||| | || || ||| |||| ||||| |||||| Sbjct 1699981 GGAGTTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTC 1699922 Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 || || || |||||||| || || || ||||| ||||||| Sbjct 1699921 TTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATG 1699880 >seq2087 Length=2955978 Score = 84.2 bits (92), Expect = 6e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239 ||||| || ||||| ||| |||||||||| ||||||| || ||| || ||||| Sbjct 1896096 GATTCATGTAACCGGAAGAGCAACCAGCAGAACCTTGGCACCATTAAGTCTTCAAACCTG 1896037 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 || || ||||||||||| |||||| ||| || ||||| || |||||| | || || Sbjct 1896036 TGCACTGAGATTATTGAGTACACCAGTCCAACAGAAACTGCTGTGTGTAACTTGGCATCT 1895977 Query 364300 ATCGCGCTTCC 364310 || || ||||| Sbjct 1895976 ATTGCTCTTCC 1895966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303295386526052