Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1371 113 1e-19
seq2087 84.2 6e-11
>seq1371
Length=8752182
Score = 113 bits (124), Expect = 1e-19
Identities = 340/522 (65%), Gaps = 11/522 (2%)
Strand=Plus/Minus
Query 22433 TTAAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCATTCGCGGAAC 22492
||||||| ||||| |||||||| || ||||| | || || || || ||
Sbjct 1700394 TTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGAATCGTTTGCTGAGA 1700335
Query 22493 GTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCT 22552
| | ||||| |||||| |||||||| |||||||| |||||| || || | ||||
Sbjct 1700334 GGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCT 1700275
Query 22553 TTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCC 22612
| ||||| ||||| |||| | ||||| || |||| || || || ||| | || |
Sbjct 1700274 TCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGCTGATATCGC 1700215
Query 22613 GAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATA-TCATTCAT 22671
|||| || || ||||| |||||||| || ||||||| | | || | | |
Sbjct 1700214 GAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATACAG----CTTACTGAAGAAG 1700159
Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAACGTCTA 22731
|| || ||| | || | | || ||| ||||||| ||| | || ||
Sbjct 1700158 AAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTTAAGGATGCAGTCGAAATCGAGCGAGAG 1700099
Query 22732 TTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAGTACA 22791
|| | ||| ||| | || || | || |||| || || || ||||||
Sbjct 1700098 TTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGTCAG 1700039
Query 22792 TATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTATAAC 22851
|| ||| | |||||||||||| | || || | |||| || | || |||| || ||
Sbjct 1700038 TACATTGAGTTTGTTGCAGATAGGCTGTTGGCTGCACTTGGGTGTGAAAAGGTTT---AC 1699982
Query 22852 GTCGTT---AATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTTC 22908
| ||| || || || || |||||||| | || || ||| |||| ||||| ||||||
Sbjct 1699981 GGAGTTCAGAACCCGTTCGATTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTC 1699922
Query 22909 TTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950
|| || || |||||||| || || || ||||| |||||||
Sbjct 1699921 TTTGAGAAGAGAGTTGGGGAGTATCAGAAAGCTTCTGTTATG 1699880
>seq2087
Length=2955978
Score = 84.2 bits (92), Expect = 6e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 364180 GATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTA 364239
||||| || ||||| ||| |||||||||| ||||||| || ||| || |||||
Sbjct 1896096 GATTCATGTAACCGGAAGAGCAACCAGCAGAACCTTGGCACCATTAAGTCTTCAAACCTG 1896037
Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299
|| || ||||||||||| |||||| ||| || ||||| || |||||| | || ||
Sbjct 1896036 TGCACTGAGATTATTGAGTACACCAGTCCAACAGAAACTGCTGTGTGTAACTTGGCATCT 1895977
Query 364300 ATCGCGCTTCC 364310
|| || |||||
Sbjct 1895976 ATTGCTCTTCC 1895966
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303295386526052
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |