Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2164 114 1e-20 seq374 109 5e-19 seq1717 104 2e-17 seq2618 100 2e-16 seq2417 98.7 9e-16 seq896 96.9 3e-15 seq607 93.3 4e-14 seq530 93.3 4e-14 seq2390 91.5 1e-13 seq3320 89.7 4e-13 seq863 87.8 2e-12 >seq2164 Length=10083965 Score = 114 bits (126), Expect = 1e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | |||||||| || Sbjct 642412 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 642471 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||||||||| | |||||| ||||| |||||||||||||| || || || Sbjct 642472 TCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 642531 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || |||||| Sbjct 642532 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGATTA 642590 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 |||||||| || ||||| || |||| Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCA 642617 >seq374 Length=4160932 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || || || ||||| | |||||| | || || ||| Sbjct 3965971 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTCG 3966030 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||||| ||||| |||||||| || || || || Sbjct 3966031 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 3966090 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| | ||||||||| || ||||||| || | | ||||| ||| Sbjct 3966091 CAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAAC 3966150 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || |||| || ||| | ||||||| |||||| Sbjct 3966151 ATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGA 3966198 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || | ||||| || | || ||| ||||||||||| | Sbjct 3965514 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 3965573 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||| || || || | ||||| |||||| ||||| || || || || || || || Sbjct 3965574 CGATACTATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 3965633 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||| | || ||| ||||| |||||||||| | | | | || || || Sbjct 3965634 GCAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACCCTTGCTGACTACAA 3965693 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || || || ||| ||||||| ||| Sbjct 3965694 CATCCAGAAGGAGTCCACACTTCATTTGGTG 3965724 >seq1717 Length=9716283 Score = 104 bits (114), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||||||||| | || ||| | || ||||| | Sbjct 1668749 AATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCA 1668690 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | |||||| ||||| |||||||||||||| || || ||| Sbjct 1668689 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1668630 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATT 24165 ||||| | | || | | || || ||| | ||||||| |||| || | || |||| Sbjct 1668629 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 1668572 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | |||||||| || ||||| || ||||||| ||| Sbjct 1668571 ACAACATTCAGAAGGAATCGACGCTTCATTTGGTG 1668537 >seq2618 Length=3490594 Score = 100 bits (110), Expect = 2e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | || ||||| || Sbjct 3445358 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTCGAATCC 3445299 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | |||||| ||||| |||||||||||||| || || || Sbjct 3445298 TCCGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 3445239 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || ||| || Sbjct 3445238 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 3445180 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 3445179 CAACATCCAGAAGGAGTCCACCCTTCA 3445153 >seq2417 Length=2538752 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || || ||||| ||| | || || | || || ||| | Sbjct 2310188 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 2310247 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | ||||| |||||| || || || ||||| || || ||||| Sbjct 2310248 AGACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCA 2310307 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || ||| |||| | | || ||||| ||||| |||| || | | | || || || Sbjct 2310308 GCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAA 2310367 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| ||||| || |||||| |||| || ||| | | || ||||||||| Sbjct 2310368 CATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGA 2310416 >seq896 Length=2616551 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | |||||||| || Sbjct 1343146 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 1343205 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | || ||| ||||| |||||||||||||| || ||||| Sbjct 1343206 TCTGACACAATCGACAATGTGAAAGCCAAGATCCAAGACAAAGAAGGCATCCCACCCGAC 1343265 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || || | || ||| || || |||||||||| | | || | || ||| || Sbjct 1343266 CAACAACGCCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 1343324 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || || || || |||| Sbjct 1343325 CAACATCCAGAAGGAGTCGACTCTTCA 1343351 >seq607 Length=2562756 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || || |||||||| | ||||| || | | Sbjct 507250 ATGCAGATCTTTGTCAAGACTCTTACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 507309 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| ||| | || || |||||| || |||||||| || || || || || Sbjct 507310 GACACCATTGAGAATGTGAAGACAAAGATACAGGATAAAGAAGGGATCCCACCAGACCAG 507369 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGA-CAGAAACGTCAGC-GATTATA 24168 ||||| || |||| || || ||||| || || |||| | || | | || || |||| Sbjct 507370 CAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGTCGGACTCTT--GCAGACTATA 507427 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||| || || ||||| | ||||| || | | ||||||||||| Sbjct 507428 ACATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGAGGAGG 507476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||||||| | || ||| | ||||| || | Sbjct 507478 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTTGAAAGCTCT 507537 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||||| |||||||| || || || || || || Sbjct 507538 GACACTATCGATAACGTTAAGACAAAGATTCAGGACAAAGAGGGAATCCCACCAGACCAG 507597 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| ||||| | | ||| ||||| | || |||| | | | | | || ||||| || Sbjct 507598 CAGAGGCTGATCTTTGCCGGGAAGCAGTTGGATGATGGCCGGA-CATTGGCTGATTACAA 507656 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || || || |||||||| | || ||||| | | ||||||||||| Sbjct 507657 TATCCAGAAGGAATCTACTTTGCACCTAGTGCTCCGGTTGAGAGGAGG 507704 >seq530 Length=4616287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || ||||| | || ||| |||| || ||| | Sbjct 1166065 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTC 1166006 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||| | || || |||||| ||||| |||||||| || || || || Sbjct 1166005 GGACACCATCGACAATGTTAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 1165946 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| |||||| | ||| ||||| || || |||| || | | ||||| || Sbjct 1165945 GCAGAGGTTGATTTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCGGATTACAA 1165886 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || ||||| || || || |||| || ||| | ||||||| |||||| Sbjct 1165885 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGA 1165837 >seq2390 Length=8026821 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || ||||| |||| || ||| | || ||| | || || || || Sbjct 2843226 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATCC 2843167 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | |||||| ||||| ||||||||||| || || || || Sbjct 2843166 TCGGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGAC 2843107 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTA 24166 ||||| | || |||| || ||| || || |||||||||| | | || | || ||| || Sbjct 2843106 CAACAACGTCTCATTTTCGCCGGAAAACAGCTCGAAGATGGCCG-CACTTTAGCCGACTA 2843048 Query 24167 TAACATTCAAAAAGAATCTACAATTCA 24193 ||||| || || ||||| || |||| Sbjct 2843047 CAACATCCAGAAGGAATCGACTCTTCA 2843021 >seq3320 Length=4692610 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| ||||||| ||| | || ||| | |||||||| | Sbjct 1079517 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 1079576 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 ||||| ||||| | |||||| ||||| |||||||||||||| || || ||| Sbjct 1079577 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1079636 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAA-ACGT-CAGCGATT 24165 ||||| | | || | | || || ||| | ||||||| |||| || | || |||| Sbjct 1079637 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCA--GATT 1079694 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 | || ||||| || ||||| || ||||| | ||| Sbjct 1079695 ACAAAATTCAGAAGGAATCGACGCTTCATCTGGTG 1079729 >seq863 Length=2839217 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || || || | || || | || || ||| | Sbjct 2112321 AATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACTATCACTTTGGAGGTTGAGAGCTC 2112380 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| || || | |||||| |||||| || || |||||||| ||||| || || Sbjct 2112381 TGACACTATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAAGGCATTCCTCCGGACCA 2112440 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || || |||| | | ||| ||||| || || |||| || | | | ||||| || Sbjct 2112441 GCAAAGGTTGATCTTTGCCGGGAAGCAGCTTGATGATGGGAGGACCCTTGCGGATTACAA 2112500 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || ||||| |||| || ||| | | ||||||||||| Sbjct 2112501 TATCCAAAAGGAGTCTACCCTTCACTTGGTGCTGCGCTTGAGAGGAGG 2112548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429917733900330