Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1717 93.3 4e-14 seq530 87.8 2e-12 >seq1717 Length=9716283 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 115282 AAAAATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTC 115341 ||| ||||| ||||| || ||||| || || ||||||||||| ||| | || || || Sbjct 1668750 AAATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATC 1668691 Query 115342 CAGCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTG 115400 |||||| | ||||| || ||| || || || ||||||||| |||| | Sbjct 1668690 ATCCGACAC-AATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAG 1668632 Query 115401 ATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATT 115460 |||| ||| | | || | ||| || |||||||| ||||||| | ||| | || |||| Sbjct 1668631 ATCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATT 1668572 Query 115461 ATAACATTCAAAAAGAGTCTACTATACATATGGTG 115495 | |||||||| || || || || | ||| ||||| Sbjct 1668571 ACAACATTCAGAAGGAATCGACGCTTCATTTGGTG 1668537 >seq530 Length=4616287 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| |||||||||||||| | || ||||| || || ||| ||||| || | Sbjct 1166749 AATGCAGATTTTTGTCAAAACCTTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTC 1166690 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 |||||| || ||||| || || |||||| || || ||||| ||||| || | Sbjct 1166689 CGACACCATT-GACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACC 1166631 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 ||||||| || || | || || || || | || |||| | |||| | ||||| || | Sbjct 1166630 AGCAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACA 1166571 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTG 115495 |||| || || ||||| ||| | || ||||| Sbjct 1166570 ACATCCAGAAGGAGTCCACTCTTCACTTGGTG 1166539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425325928994320