Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq374 93.3 3e-14 seq530 91.5 1e-13 seq3251 89.7 4e-13 seq607 89.7 4e-13 seq2618 82.4 6e-11 seq896 82.4 6e-11 >seq374 Length=4160932 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| |||||||||||||| | |||| | | ||||| | || Sbjct 3965489 TGGAGAGTTGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCGAGCTGC 3965430 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| || ||||| || | ||||| ||||| ||||| Sbjct 3965429 TTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTG 3965370 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | || ||| | |||||| || ||||| || Sbjct 3965369 GCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTCTTTCCTGTT 3965310 Query 16913 AGCGTTTTGACAAAAATCTGCATT 16936 || ||||||||||| ||||||||| Sbjct 3965309 AGGGTTTTGACAAAGATCTGCATT 3965286 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||| || ||||||||||| || |||||||||||||||| || | | ||| Sbjct 3965954 AGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGGCCATCC 3965895 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || |||| | || ||| ||||| || | || || ||||| Sbjct 3965894 TCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCC 3965835 Query 16844 GCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 ||| ||| | ||| || | | | | |||||| | ||| |||| || ||||| Sbjct 3965834 TGAATCTTGGT-CTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGT 3965776 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || || ||||||||||| Sbjct 3965775 CTTCCCGGTAAGGGTCTTCACGAAAATCTGCAT 3965743 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| |||||||| || || | || | | || Sbjct 3966182 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATGTTGTAATCCGCAAGAGTCCTTCCATCT 3966123 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || ||||| ||| |||| | || ||| ||||| || | ||| || ||||| Sbjct 3966122 TCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 3966063 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || ||||| ||| || | | | | ||||| ||| |||| ||| |||| Sbjct 3966062 TGAATCTTTGC--CTTGACATTGTCGATGGTGTCCGAACTCTCAACCTCCAGGGTAATGG 3966005 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||||| || ||||| ||||||||||| Sbjct 3966004 TCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 3965971 >seq530 Length=4616287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||||||||| || |||||||||||||| | |||| | | ||| Sbjct 1166537 AGCACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 1166596 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || || | || |||| || ||||| || | || || ||||| Sbjct 1166597 TCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCTTCCTTGTCT 1166656 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| ||| || | | | | |||||| | || ||| | |||||| || Sbjct 1166657 TGAATTTTGGCCTTGACGTTGTCAATGGTGTCGGAGCTTTCGACTTCGAGGGTGATTGTC 1166716 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || | ||||||||||||||||||||| Sbjct 1166717 TTTCCTGTTAAGGTTTTGACAAAAATCTGCATT 1166749 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || ||||||||||| || ||||| || || | || | | ||| Sbjct 1165853 AGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCC 1165912 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| |||| | || ||| ||||| || | ||| || ||||| Sbjct 1165913 TCAAGCTGCTTCCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 1165972 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | ||| || | | | | ||||| | ||| || | ||||||||| Sbjct 1165973 TGAATCTTCGCCTTAACATTGTCGATGGTGTCCGAGCTCTCAACCTCGAGGGTGATGGTC 1166032 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||||||||| || ||||| |||||||||||| Sbjct 1166033 TTTCCGGTCAAGGTCTTGACGAAAATCTGCATT 1166065 >seq3251 Length=7052893 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || |||||||| |||||||| || |||| || || | ||| Sbjct 3480498 AGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCC 3480557 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | |||| || ||| ||||| || | |||||| || || Sbjct 3480558 TCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCT 3480617 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | | || || | || ||| | |||||||||| Sbjct 3480618 TGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTT 3480677 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || || || || || ||||||||||| Sbjct 3480678 TTCCCAGTAAGAGTCTTAACGAAAATCTGCAT 3480709 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || ||||||||||| ||||||||||| || | ||| || | || ||||| || Sbjct 3481191 TGGAGGGTAGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGC 3481250 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| ||| |||||| || | ||||| || || ||||| Sbjct 3481251 TTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCCTGAATTTTG 3481310 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | ||| || | |||| || | ||||||||| || || ||| Sbjct 3481311 GTCTTGACATTCTCAATAGTATCAGAAGTCTCCACCTCGAGGGTGATGGTCTTGCCAGTC 3481370 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| || ||||| Sbjct 3481371 AGGGTTTTCACAAAGATTTGCAT 3481393 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||||||||| |||||||| || |||| |||| | ||| Sbjct 3480270 AGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGACCATCC 3480329 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| || || ||| | || |||| ||| ||||| || | ||||| ||||| Sbjct 3480330 TCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCCTTGTCC 3480389 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | |||||| | | | || || | ||| || | |||||| || Sbjct 3480390 TGAATCTTAGTCTTCACATTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTC 3480449 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || || ||||| |||||||| Sbjct 3480450 TTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 3480481 >seq607 Length=2562756 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| || || |||||||| |||||||| || |||| || || | ||| Sbjct 507917 AGGACCAAGTGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCC 507858 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||| || || || ||| | |||| || ||| ||||| || | |||||| || || Sbjct 507857 TCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCT 507798 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | | |||||| | | | | || || | || ||| | |||||||||| Sbjct 507797 TGAATCTTCGTCTTCACATTGTCAATTGTATCTGAGCTTTCAACTTCTAGGGTGATGGTT 507738 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || ||||| || ||||| || ||||| Sbjct 507737 TTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 507706 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| ||||||||||| || | ||| || | || ||||| || Sbjct 507224 TGGAGGGTGGACTCCTTTTGGATGTTGTAGTCAGCTAGAGTTCTGCCATCATCCAACTGC 507165 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || |||| ||| |||||| || | ||||| || || ||||| Sbjct 507164 TTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATTTTG 507105 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | |||||| | ||| || | ||| ||||| || || ||| Sbjct 507104 GTCTTGACATTCTCAATAGTGTCAGAAGTCTCGACCTCGAGGGTTATGGTCTTCCCAGTC 507045 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| ||||| || ||||| Sbjct 507044 AGGGTTTTCACAAAGATTTGCAT 507022 >seq2618 Length=3490594 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | || | | || || | ||| Sbjct 3445153 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 3445212 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || |||||||| || | ||| |||||||| || || Sbjct 3445213 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG 3445272 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| || || | | | | |||||| || || || | ||| |||||||| || | Sbjct 3445273 GCT--TTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCG 3445330 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||||||||| Sbjct 3445331 TTAGGGTTTTCACGAAGATCTGCATTTT 3445358 >seq896 Length=2616551 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/208 (69%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || || |||||||| || |||||||||||||| | || | | || || | ||| Sbjct 1343351 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 1343292 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || || |||||||| || | ||| |||||||| || || Sbjct 1343291 TTTCCGGCGAAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTG 1343232 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | | ||||| || || ||| | ||| |||||||| || | Sbjct 1343231 GCT--TTCACATTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCG 1343174 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTT 16938 | || ||||| || || ||||||||||| Sbjct 1343173 TTAGGGTTTTCACGAAGATCTGCATTTT 1343146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405070789583140