Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq2164 93.3 3e-14 seq607 91.5 1e-13 seq3320 86.0 4e-12 seq3251 86.0 4e-12 seq1717 82.4 5e-11 seq863 82.4 5e-11 >seq2164 Length=10083965 Score = 93.3 bits (102), Expect = 3e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | ||||| ||||||| |||||||| ||| | ||| ||| || Sbjct 642412 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 642471 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || | || || || || ||||| || | || | || Sbjct 642472 TCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGAC 642531 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | || ||||| || || ||||| || |||||| ||| | ||||||||| Sbjct 642532 CAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTAC 642591 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 || |||||||||||||| |||||||| Sbjct 642592 AACATTCAGAAGGAATCCACTCTTCA 642617 >seq607 Length=2562756 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || | || || |||||||| ||| | ||| ||| | || Sbjct 507706 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 507765 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| || ||| ||||| ||||| | ||||| || Sbjct 507766 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTG---AC 507822 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||||| || || || || ||| | ||| |||| |||||| Sbjct 507823 CAGCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTAC 507882 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || || |||||||| || || || |||| Sbjct 507883 AACATCCAAAAGGAATCAACCCTGCACTTGGT 507914 >seq3320 Length=4692610 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 || ||||| || || | ||||| |||| || |||||||| ||| | ||| ||| | Sbjct 1079517 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 1079576 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 | || || | | | || | || || || || ||||| || | || | | Sbjct 1079577 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1079636 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| | | ||||||||||| |||||| | |||||| || ||| | || |||||| Sbjct 1079637 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 1079696 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| || |||||| |||| Sbjct 1079697 AAAATTCAGAAGGAATCGACGCTTCATCTGGT 1079728 >seq3251 Length=7052893 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || |||||||| ||| ||||| ||| | | Sbjct 3480937 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTTGAAAGCTCT 3480878 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | ||||| ||| ||| || || ||||| | || | |||| Sbjct 3480877 GACACTATCGATAACGTTAAGACAAAGATTCAGGACAAGGAGGGAATTCCACCAGACCAG 3480818 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||| || || || | || ||| || || |||| ||||||||| Sbjct 3480817 CAGAGGCTGATCTTTGCCGGGAAGCAGTTGGATGATGGAAGGACATTGGCTGATTACAAT 3480758 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||||| | || |||| | || || | ||||| Sbjct 3480757 ATTCAGAAGGAATCTACTTTGCACCTGGTGCTTCGGTTGAGGGGAGG 3480711 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || |||| || | || || |||||||| ||| | ||| ||| | || Sbjct 3480709 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 3480650 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | || | ||| || ||| ||||| ||||| | ||||| || Sbjct 3480649 GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTG---AC 3480593 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||||| || || || || ||| | ||| |||| |||||| Sbjct 3480592 CAGCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTAC 3480533 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || || |||||||| || || || |||| Sbjct 3480532 AACATCCAAAAGGAATCAACCCTGCACTTGGT 3480501 >seq1717 Length=9716283 Score = 82.4 bits (90), Expect = 5e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 21963 ATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAATATTCAGAAG 22022 ||||||||||| |||||| | |||||| || ||| | || |||||||| ||||||||| Sbjct 1668617 ATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAACATTCAGAAG 1668558 Query 22023 GAATCTACTCTTCATATGGT 22042 ||||| || |||||| |||| Sbjct 1668557 GAATCGACGCTTCATTTGGT 1668538 >seq863 Length=2839217 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| ||||| || || || ||||| |||| || | | Sbjct 2112094 ATGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCC 2112153 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| |||||| || || ||||| | || | | || Sbjct 2112154 GACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAG 2112213 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| | ||||||||||| || || || || ||| ||| | || ||||||||| Sbjct 2112214 CAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAAT 2112273 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || || || ||| | || | || ||| |||| ||| Sbjct 2112274 ATCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGGA 2112321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358109584844044