Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1371 161 2e-34 seq2087 158 2e-33 >seq1371 Length=8752182 Score = 161 bits (178), Expect = 2e-34 Identities = 405/613 (66%), Gaps = 12/613 (2%) Strand=Plus/Minus Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||||| || |||| ||| |||| || |||||||||||||| || |||||||| || Sbjct 1700637 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTC 1700578 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || |||||||| ||||| ||| ||| || ||| |||| Sbjct 1700577 TCGAGAATCTCGCCGGAAGATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCT 1700518 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | |||||||| ||||| | || | | | Sbjct 1700517 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 1700458 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | |||||| ||| | | | ||| | || || || || || || || | Sbjct 1700457 CTTACATCAAAGATTCTAAC---CTTAAAACCCATCTTTTTCGTGCAATTGAAACTATCC 1700401 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || | ||||||||||| || ||||| || ||||| || || | || | ||| Sbjct 1700400 CTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 1700344 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 | | |||||| | | || ||| | || || || || |||||||| || ||| Sbjct 1700343 TTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 1700284 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 |||||||||||||||||| || | || |||||| ||| | |||||||||||||| | Sbjct 1700283 GCTCCATCTTCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGC 1700224 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873 | || | ||||| ||||| || | || ||||||||||| || | | ||| | Sbjct 1700223 TGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATAC---AGCTTAC 1700167 Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933 | | | | |||| ||| ||| | || || | | ||| || || || |||| Sbjct 1700166 TGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTTAAGGATGCAGTCGAAATCG 1700107 Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993 || |||||| | || | |||| || ||| ||||| || |||||| || || | Sbjct 1700106 AGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGA 1700047 Query 42994 TGTGCAAGTACAT 43006 || | ||||||| Sbjct 1700046 TGAGTCAGTACAT 1700034 >seq2087 Length=2955978 Score = 158 bits (174), Expect = 2e-33 Identities = 416/630 (66%), Gaps = 14/630 (2%) Strand=Plus/Minus Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456 ||||| || |||| ||| |||| || |||||||||||||| |||||||||||||| Sbjct 719458 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCTGACGGCATAGTTC 719399 Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516 ||||| || ||| || |||||||||||||| ||| ||| || ||| |||| Sbjct 719398 TCGAGAATCTCGCCGGAAGATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCGCGCTTTCT 719339 Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576 | |||||||| || ||||| || ||| | |||||||| ||||| | || | | | Sbjct 719338 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 719279 Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGC 42633 | || ||| ||| | | | ||| | || || || || || || || | Sbjct 719278 CTTATATCAAAGATTC---TAACCTTAAAACCCATCTTTTTCGTGCAATTGAAACTATCC 719222 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || | ||||||||||| || ||||| || ||||| || || | || | ||| Sbjct 719221 CTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 719165 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTC 42752 | | |||||| | | || ||| | || || || || ||||||| |||| | || Sbjct 719164 TTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTT 719105 Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | ||||||||||||||| || || | | ||||| || | |||||||||||||| Sbjct 719104 G-CTCCATCTTCTGGCTTAAAAAGCGTGGGCTAATGCCGGGTTTAACCTTCTCGAACGAG 719046 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || | ||||| ||||| ||| | |||||||| || ||||| | ||| Sbjct 719045 CTGATATCGCGAGACGAAGGGCTTCATTGTGACTTTGCTTG---TCTGTTGTACAGCTTA 718989 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || | | | |||| |||| ||| | || || | | ||| || || || ||| Sbjct 718988 CTGAAGAAGAAGCTGAGTGTGGAGAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATC 718929 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992 ||| |||||| | || | |||| || ||| ||||| || |||||| || || Sbjct 718928 GAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTG 718869 Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGAC 43022 ||| | ||||||| ||| || || ||| Sbjct 718868 ATGAGTCAGTACATTGAGTTTGTTGCAGAC 718839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944298050419360