Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq1371 161 2e-34
seq2087 158 2e-33
>seq1371
Length=8752182
Score = 161 bits (178), Expect = 2e-34
Identities = 405/613 (66%), Gaps = 12/613 (2%)
Strand=Plus/Minus
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
||||| || |||| ||| |||| || |||||||||||||| || |||||||| ||
Sbjct 1700637 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCAGACGGCATCGTTC 1700578
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
||||| || ||| || |||||||| ||||| ||| ||| || ||| ||||
Sbjct 1700577 TCGAGAATCTCGCCGGAAGATTCATGAAGGAGGTTCAGGTTGCTGAAGCTCGCGCTTTCT 1700518
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
| |||||||| || ||||| || ||| | |||||||| ||||| | || | | |
Sbjct 1700517 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 1700458
Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGC 42633
| |||||| ||| | | | ||| | || || || || || || || |
Sbjct 1700457 CTTACATCAAAGATTCTAAC---CTTAAAACCCATCTTTTTCGTGCAATTGAAACTATCC 1700401
Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693
| || | ||||||||||| || ||||| || ||||| || || | || | |||
Sbjct 1700400 CTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 1700344
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753
| | |||||| | | || ||| | || || || || |||||||| || |||
Sbjct 1700343 TTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCT 1700284
Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813
|||||||||||||||||| || | || |||||| ||| | |||||||||||||| |
Sbjct 1700283 GCTCCATCTTCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGC 1700224
Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACC 42873
| || | ||||| ||||| || | || ||||||||||| || | | ||| |
Sbjct 1700223 TGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGCCTGCCTGCTATAC---AGCTTAC 1700167
Query 42874 TCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCG 42933
| | | | |||| ||| ||| | || || | | ||| || || || ||||
Sbjct 1700166 TGAAGAAGAAGCTGAGTGTTGAGAAGGTGCAGGGGATAGTTAAGGATGCAGTCGAAATCG 1700107
Query 42934 AGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCA 42993
|| |||||| | || | |||| || ||| ||||| || |||||| || || |
Sbjct 1700106 AGCGAGAGTTCGTAACCGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTGA 1700047
Query 42994 TGTGCAAGTACAT 43006
|| | |||||||
Sbjct 1700046 TGAGTCAGTACAT 1700034
>seq2087
Length=2955978
Score = 158 bits (174), Expect = 2e-33
Identities = 416/630 (66%), Gaps = 14/630 (2%)
Strand=Plus/Minus
Query 42397 ACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCA 42456
||||| || |||| ||| |||| || |||||||||||||| ||||||||||||||
Sbjct 719458 ACGAACAGCATTTCATCACCCACATCCTCGCCTTCTTCGCCGCATCTGACGGCATAGTTC 719399
Query 42457 ATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCT 42516
||||| || ||| || |||||||||||||| ||| ||| || ||| ||||
Sbjct 719398 TCGAGAATCTCGCCGGAAGATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCGCGCTTTCT 719339
Query 42517 ACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACA 42576
| |||||||| || ||||| || ||| | |||||||| ||||| | || | | |
Sbjct 719338 ATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCTTTTAGAAA 719279
Query 42577 CGTACATCCTGGATCCCGTCGAGCGTAA---CGGGCTGTTCAAGGCCATGGAGACGATGC 42633
| || ||| ||| | | | ||| | || || || || || || || |
Sbjct 719278 CTTATATCAAAGATTC---TAACCTTAAAACCCATCTTTTTCGTGCAATTGAAACTATCC 719222
Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693
| || | ||||||||||| || ||||| || ||||| || || | || | |||
Sbjct 719221 CTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATGGTGCTGA---ATCGT 719165
Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCT-CGGGCGCCTTC 42752
| | |||||| | | || ||| | || || || || ||||||| |||| | ||
Sbjct 719164 TTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGGAGTTTTT 719105
Query 42753 GCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812
| ||||||||||||||| || || | | ||||| || | ||||||||||||||
Sbjct 719104 G-CTCCATCTTCTGGCTTAAAAAGCGTGGGCTAATGCCGGGTTTAACCTTCTCGAACGAG 719046
Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872
|| || | ||||| ||||| ||| | |||||||| || ||||| | |||
Sbjct 719045 CTGATATCGCGAGACGAAGGGCTTCATTGTGACTTTGCTTG---TCTGTTGTACAGCTTA 718989
Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932
|| | | | |||| |||| ||| | || || | | ||| || || || |||
Sbjct 718988 CTGAAGAAGAAGCTGAGTGTGGAGAAGGTTCAGGGGATAGTGAAGGATGCAGTCGATATC 718929
Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTC 42992
||| |||||| | || | |||| || ||| ||||| || |||||| || ||
Sbjct 718928 GAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGGATGAACTGTGAGCTG 718869
Query 42993 ATGTGCAAGTACATCCAGTACGTCGCCGAC 43022
||| | ||||||| ||| || || |||
Sbjct 718868 ATGAGTCAGTACATTGAGTTTGTTGCAGAC 718839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944298050419360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |