Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq3251 104 2e-17 seq3320 87.8 1e-12 seq1717 87.8 1e-12 seq607 84.2 2e-11 >seq3251 Length=7052893 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| |||| ||| |||||||| || | || ||||||||||| |||||||| || Sbjct 3480710 ACCTCCCCTCAACCGAAGCACCAGGTGCAAAGTAGATTCCTTCTGAATATTGTAATCAGC 3480769 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| |||| | | || ||||| ||||| |||||||| ||||| | |||||| || | Sbjct 3480770 CAA-TGTCCTTCCATCATCCAACTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGTG 3480828 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| ||| ||| ||||| | | | | | |||| ||| Sbjct 3480829 GAATTCCCTCCTTGTCCTGAATCTTTGTCTTAACGTTATCGATAGTGTCAGAGCTTTCAA 3480888 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || || |||||||| || || || ||||| || || ||||| Sbjct 3480889 CTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 3480937 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| || || |||||| |||||||||||||| ||||| ||| Sbjct 3480264 AGACGGAGAACAAGATGGAGGGTAGACTCCTTTTGAATGTTGTAATCAGCCAAGGTTCGA 3480323 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | |||||| || || | | ||| Sbjct 3480324 CCATCCTCCAATTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCC 3480383 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCGCATTCGACC 34086 |||||| ||| || ||| | | || || |||||| || || |||| Sbjct 3480384 TTGTCCTGAATCTTAGTCTTCA---CATTCTCAATTGTATCAGAAGTCTCAACCTCGAGG 3480440 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || ||||| || || ||||||||||| ||||| Sbjct 3480441 GTGATAGTCTTCCCGGTGAGGGTCTTCACAAAGATCTGCAT 3480481 >seq3320 Length=4692610 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||||||||| ||||||||||| ||||||||||| | | || Sbjct 1079737 AGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATTTTGTAATCTGCAAGTGTTCTT 1079678 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||| || || ||||| || | ||| || ||||| || | || ||| Sbjct 1079677 CCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCT 1079618 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCGCATTCGACC 34086 ||||| | | ||| || || | | | | || | |||||| ||| | Sbjct 1079617 TTGTC--TTGGATCTTGGTT-TTGACATTGTCGATTGTGTCCGATGATTCGACTTCTAGG 1079561 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||||| ||||| || ||||| |||||||| || || ||||| ||| Sbjct 1079560 GTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCATCTTT 1079516 >seq1717 Length=9716283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/225 (69%), Gaps = 6/225 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||| ||||||||| ||||||||||||||||||||||| | | || Sbjct 1668529 AGTCGAAGCACCAAATGAAGCGTCGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTT 1668588 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || |||||||| || || ||||| || | ||| || ||||| || | || ||| Sbjct 1668589 CCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCT 1668648 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCGCATTCGACC 34086 ||||| | | ||| || || | | | | || | |||||| || | Sbjct 1668649 TTGTC--TTGGATCTTGATT-TTGACATTGTCGATTGTGTCGGATGATTCGACCTCTAAG 1668705 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTTT 34131 ||||| |||||||| ||||| |||||||| || || ||||| ||| Sbjct 1668706 GTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCATATTT 1668750 >seq607 Length=2562756 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || ||||| || || ||||||||||||||||||||| ||||| ||| Sbjct 508151 AGACGGAGAACAAGATGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCCAAGGTTCGA 508092 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || ||||||||||| || ||||| || || | |||||| || || | | ||| Sbjct 508091 CCATCCTCCAATTGCTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGGATACCCTCC 508032 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCGCATTCGACC 34086 |||||| ||| || ||| | | || || |||||| || || |||| Sbjct 508031 TTGTCCTGAATCTTGGTCTTCA---CATTCTCAATTGTATCAGAAGTCTCAACCTCGAGG 507975 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || || || || || || || ||||| ||||| ||||| Sbjct 507974 GTGATAGTCTTCCCAGTGAGGGTCTTCACGAAGATCTGCAT 507934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397045530555772