Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2087 113 7e-20 >seq2087 Length=2955978 Score = 113 bits (124), Expect = 7e-20 Identities = 300/445 (67%), Gaps = 15/445 (3%) Strand=Plus/Plus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | | || || | ||||| | ||||||||| Sbjct 718733 TCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAATGGGT 718792 Query 159708 TCTTCA---CGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAA 159764 ||| | ||| | | | |||| | ||||| || |||| || |||||||| |||| Sbjct 718793 TCTGAACTCCGT-AAACCTTTTCG--CACCCGAGCGCAGCCAACAGTCTGTCTGCAACAA 718849 Query 159765 ATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824 | || ||||| || |||| |||||||||| ||||| | |||| | || || ||||| | Sbjct 718850 ACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCAT 718909 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC-G 159883 | | | ||||| ||| || ||||| || || |||| ||| | || || ||| Sbjct 718910 CAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTATC-CCCTGA-ACCTTCTC 718967 Query 159884 TAC-CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || | | |||| | | || | | ||| || || |||||||| || || || Sbjct 718968 CACACTCAGCTTCTTCTTCA-GTAAGC--TGTACAACAGACAAGCAAAGTCACAATGAAG 719024 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 || ||||| || || || | |||||| || | | | | |||||||| | ||||||| Sbjct 719025 CCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGCATTAGCCCACGCTT 719084 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 ||| ||||| || |||| |||||| | ||| || || ||||| || || |||| Sbjct 719085 TTTAAGCCAGAAGATGG-AGCAAAAACTCCCGGAGAAGAAAATCCCTTCAACACAAGCAA 719143 Query 160062 ACGCCACGAGCCTCTCACCAAAAGA 160086 | || | | ||||||| |||| || Sbjct 719144 AAGCAATTAACCTCTCAGCAAACGA 719168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795120551112160