Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq863 107 1e-18 seq1717 95.1 8e-15 seq374 89.7 4e-13 seq2164 87.8 1e-12 seq3320 86.0 4e-12 seq2390 84.2 2e-11 >seq863 Length=2839217 Score = 107 bits (118), Expect = 1e-18 Identities = 143/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||| || | | ||| |||| || | || ||||| |||| Sbjct 2111828 TCCTTCTGGATGTTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGCAAAG 2111769 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT-TTAA--TC 39645 || || | ||||||||||| ||| | ||||||||||| | | | || || |||| | Sbjct 2111768 ATCAACCTCTGCTGATCCGGGGGGATTCCTTCTTTGTC-CTGAATCTTGGTCTTAACATT 2111710 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| || ||||| | |||||| || ||||| ||||||||||| || || ||||| ||| Sbjct 2111709 GTCG--ACAGTGTCAGAGCTTTCAACCTCCAAGGTAATTGTTTTTCCTGTCAAAGTCTTT 2111652 Query 39706 ACGAAGATCTGCAT 39719 || ||||| ||||| Sbjct 2111651 ACAAAGATTTGCAT 2111638 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||| ||||| || | | || |||| || | || ||||| |||| Sbjct 2112284 TCCTTCTGGATATTGTAATCAGCAAGAGTACGCCCATCCTCGAGCTGCTTCCCAGCAAAG 2112225 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCG 39646 || || | ||||||||| | ||| | || || ||||| ||||| |||| | | Sbjct 2112224 ATCAACCTCTGCTGATCTGGGGGGATTCCCTCCTTGTCTTGAATTTTGGTCTTAACATTG 2112165 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 || || ||||| | ||| || || ||||||||||| || || || ||||||||||| | Sbjct 2112164 TCAATA--GTGTCGGAGCTCTCAACCTCCAAAGTAATAGTCTTCCCTGTTAAAGTTTTCA 2112107 Query 39707 CGAAGATCTGCAT 39719 | || || ||||| Sbjct 2112106 CAAAAATTTGCAT 2112094 >seq1717 Length=9716283 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||| | || || || | || || |||||||| | || ||| || || || || Sbjct 1668510 AATCATGGTACCCCCACGAAGTCGAAGCACCAAATGAAGCGTCGATTCCTTCTGAATGTT 1668569 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 ||||| || | | | |||| |||||||||||||| |||| ||||| || || || Sbjct 1668570 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 1668629 Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660 ||| | || | |||||||||||| | || || || | || |||| | |||||| Sbjct 1668630 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCG--ATTGTGTCG 1668687 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||| || || || || || ||||| || |||| ||||| ||||| |||||||| Sbjct 1668688 GATGATTCGACCTCTAAGGTTATGGTTTTTCCAGTTAGGGTTTTCACGAAAATCTGCAT 1668746 >seq374 Length=4160932 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || | |||||| || |||||||| | |||| || || || || || || | Sbjct 3965973 CATC-CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGT 3965915 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||||||| || |||| || | || || || | ||||| || | |||||| || | Sbjct 3965914 CGGCCAAAGTACGGCCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTG 3965855 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTT 39666 ||| | ||||| ||||| | | | || || | | | | | | || |||| | ||| Sbjct 3965854 GGGGGATACCTTCCTTGTC-CTGAATCTTGGTCTTAACATTGTCAATGGTGTCGGAGCTC 3965796 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||| || || || || | || || ||||| |||||||| Sbjct 3965795 TCAACCTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTCACGAAAATCTGCAT 3965743 >seq2164 Length=10083965 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || || | || | |||| ||| || || || || |||||||| Sbjct 642641 CCACCACGAAGACGAAGAACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCT 642582 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| ||| |||| || | ||||| ||| | || || | ||| || || || | || Sbjct 642581 AAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGG 642522 Query 39613 ACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||||||||| | || || | | || |||| | ||||| | | ||| | Sbjct 642521 ATGCCTTCTTTGTCCTGGATCTTGGCTTTGACATTGTCG--ATGGTGTCCGAGGATTCGA 642464 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | || || ||||||||||||| ||||| |||||||||||||| Sbjct 642463 CTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 642415 >seq3320 Length=4692610 Score = 86.0 bits (94), Expect = 4e-12 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||| | || || || | || || |||| ||| | || ||| || || || || Sbjct 1079756 AATCATGGTACCCCCACGAAGTCGAAGCACCAGATGAAGCGTCGATTCCTTCTGAATTTT 1079697 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 ||||| || | | | |||| |||||||||||||| |||| ||||| || || || Sbjct 1079696 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 1079637 Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660 ||| | || | |||||||||||| | || || || | || |||| | |||||| Sbjct 1079636 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGGTTTTGACATTGTCG--ATTGTGTCC 1079579 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||| || || | || || ||||| || |||| ||||| ||||| |||||||| Sbjct 1079578 GATGATTCGACTTCTAGGGTTATGGTTTTCCCAGTTAGGGTTTTCACGAAAATCTGCAT 1079520 >seq2390 Length=8026821 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || || || || ||||| ||| ||| |||| || | ||||| ||| | || Sbjct 2843032 TTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCGAA 2843091 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TC 39645 ||| | ||| || || || | || | ||||||||||| || || ||| | | Sbjct 2843092 AATGAGACGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTGGCTTTGACATT 2843151 Query 39646 GTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTT 39705 |||| | |||||| | | ||| || || | || || ||||||||||||| ||||| Sbjct 2843152 GTCGAT--TGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 2843209 Query 39706 ACGAAGATCTGCAT 39719 |||||||||||||| Sbjct 2843210 ACGAAGATCTGCAT 2843223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347354841785438