Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2390 123 3e-23 seq280 118 1e-21 seq3031 109 7e-19 seq2357 100 4e-16 seq1371 98.7 1e-15 >seq2390 Length=8026821 Score = 123 bits (136), Expect = 3e-23 Identities = 284/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || || | | || ||||| || | |||| ||||| || |||| ||| Sbjct 4596759 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGT---GTTACCCTCA 4596703 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | |||||| || | || ||||||| ||||||||| || | Sbjct 4596702 AAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCC 4596643 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 4596642 CCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAA 4596583 Query 16095 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| | | ||| ||| ||||| || || || || ||||||||||| Sbjct 4596582 GGCGCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAAC 4596524 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || || || | || | ||| || | || || || ||| || ||| || | Sbjct 4596523 AAACATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 4596465 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || || || |||||||| ||||| |||||| || | || || |||| Sbjct 4596464 CAATAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCT 4596405 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 || || ||| ||| || | || ||||||| || ||||| ||||||| || Sbjct 4596404 TAGGGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCT 4596345 Query 16333 C 16333 | Sbjct 4596344 C 4596344 >seq280 Length=2177796 Score = 118 bits (130), Expect = 1e-21 Identities = 233/338 (69%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || || | | || ||||| || | |||| ||||| || |||| ||| Sbjct 1748357 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGT---GTTACCCTCA 1748301 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | |||||| || | || ||||||| ||||||||| || | Sbjct 1748300 AAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCC 1748241 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 1748240 CCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAA 1748181 Query 16095 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| | | ||| ||| ||||| || || || || ||||||||||| Sbjct 1748180 GGAGCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAAC 1748122 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || || || | || | ||| || | || || || ||| || ||| || | Sbjct 1748121 AAACATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 1748063 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGC 16250 |||| || || || |||||||| || || |||||| Sbjct 1748062 CAATAGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGC 1748025 >seq3031 Length=105041 Score = 109 bits (120), Expect = 7e-19 Identities = 253/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| || ||||| ||||||| |||||||| | Sbjct 94187 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 94130 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | |||| | || || ||||||||||||||||| || || ||| Sbjct 94129 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 94070 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 16145 || || || | ||||| | ||||| | ||||| ||| || | || ||| Sbjct 94069 CAAGGAGCCTTACTCTTCGCCTTC----TCAAACAAATCCC--TCACCCTGGAAGCTCCC 94016 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 ||||||||||||| ||||||||| | | || | ||| | ||| || ||| | Sbjct 94015 ACACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCC 93956 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265 ||||| || | |||| || | | ||||| || || || || ||| | ||||| Sbjct 93955 TCACCAGCGACCGCTCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAGGAGA 93896 Query 16266 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 16325 ||| ||| || || || || | || ||| | ||||| | ||| | ||| ||| Sbjct 93895 CACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCC 93836 Query 16326 ACAATCTCTTCCAATTC 16342 |||| || | |||||| Sbjct 93835 ACAACTTCCTGCAATTC 93819 >seq2357 Length=1489797 Score = 100 bits (110), Expect = 4e-16 Identities = 332/504 (66%), Gaps = 18/504 (4%) Strand=Plus/Plus Query 15884 ACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGC 15943 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 961500 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 961559 Query 15944 GGCGATGACAACAATACCTG--TTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | |||| | |||| || | | | ||| ||||||||||| ||||| | ||| Sbjct 961560 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 961617 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 16059 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 961618 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 961675 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TC 16117 | || |||||||| |||||||| || || ||||| || | ||| | | || || || Sbjct 961676 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTC-TTCGCCTTCTC 961733 Query 16118 AAAGAGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 ||| | ||||| ||| || | || |||||||||||||||| ||||||||| | | Sbjct 961734 AAACAAATCCC--TCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAA 961791 Query 16176 GCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 || | ||| | ||| || ||| | ||||| || | || | || | | ||| Sbjct 961792 GCTGCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTC 961851 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 || || || || || ||| | ||||| ||| ||| || || || || | || Sbjct 961852 TTTCCGGTTCCAGGGGGCCCCACAAGGAGACACCCTTTTGGGATTTTAGCCCCCAATGCA 961911 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCCAATTC-ATCTTTGGCGGC 16354 ||| | ||||| | ||| | ||| ||||||| || | |||||| | ||| | | | Sbjct 961912 GTGTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTG- 961970 Query 16355 GTCAATCCCCTCAACATCGGTAAA 16378 ||| || ||||||||| ||| Sbjct 961971 ATCAGCACCGGCAACATCGGCAAA 961994 >seq1371 Length=8752182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/227 (70%), Gaps = 5/227 (2%) Strand=Plus/Minus Query 102106 AAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGT 102165 |||| | || ||| || | ||||| || ||||||||| | ||| ||||| || Sbjct 1700409 AAACTATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATTGATG----GT 1700354 Query 102166 CGCGT-TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 | || ||||||||| | | | || ||||| |||||||| || || ||||||||| Sbjct 1700353 GCTGAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCT 1700294 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 || |||||| | || | |||||||| ||||| || | |||||||| | |||| Sbjct 1700293 GGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTC 1700234 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 || |||||||| || || || ||||| || || ||| || ||||| Sbjct 1700233 TCGAACGAGCTGATATCGCGAGACGAAGGGCTTCACTGTGATTTTGC 1700187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620715351149920