Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq2087 98.7 1e-15 seq1371 98.7 1e-15 seq2334 87.8 2e-12 seq2675 84.2 3e-11 seq2671 84.2 3e-11 seq2379 84.2 3e-11 seq2238 84.2 3e-11 seq996 84.2 3e-11 seq728 84.2 3e-11 seq190 84.2 3e-11 >seq2087 Length=2955978 Score = 98.7 bits (108), Expect = 1e-15 Identities = 298/453 (66%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || |||||||||||| || || || || ||||| || |||| | || Sbjct 719008 GCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCC 719067 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| || || | || || ||||| ||||||| |||||||| || || ||||| || Sbjct 719068 GGCATTAGCCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATC 719127 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCAC 119675 || || ||||| || ||||| | || | ||||||||| | | || || | ||| Sbjct 719128 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCCAA 719187 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGT 119735 |||||||| | ||||| || | || |||| ||||| || || ||||| Sbjct 719188 CGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 719247 Query 119736 TGCTTCTTTTCAG--CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCAC 119793 || |||| || | ||| || ||||| | || | || |||||| | ||| Sbjct 719248 TG--GGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAG 719305 Query 119794 CATGAACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGC 119852 |||| ||||| || | || || || |||| || | ||||||||| | || || Sbjct 719306 AGTGAATGTTTTCAATG-GCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGG 719364 Query 119853 ACTTC-GTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAA 119911 || || ||| || || | || ||| || | ||| || || || ||| | ||||| Sbjct 719365 ACCTCTTTCATGAATCTT-CCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAA 719423 Query 119912 GAATGCTAAGATGTACTTTATGAATTTCTGTTC 119944 ||| || | ||||| | ||||| | |||||| Sbjct 719424 GAAGGCGAGGATGTGGGTGATGAAATGCTGTTC 719456 Score = 93.3 bits (102), Expect = 5e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 110770 TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGAT 110829 |||| |||||| | ||| || ||||||| |||| |||||||| | ||| |||| ||| Sbjct 1896920 TGGTCAACATATCTTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCATTTGAT 1896979 Query 110830 TGACCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGAATGTCGTGGATATGCATAC 110887 ||||| ||||| | || |||| | |||||||||||| ||| | | | || Sbjct 1896980 GTCCCATTAGTACCGCGTATATA--ACTTCCAGTGGCACGAATGTTGTGCACAGAAACAC 1897037 Query 110888 CAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCAT 110947 ||||||| || || |||| ||||| |||||||| | || ||| ||||||| || | Sbjct 1897038 CAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAAATTCCTT 1897097 Query 110948 CAAT 110951 |||| Sbjct 1897098 CAAT 1897101 >seq1371 Length=8752182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/521 (65%), Gaps = 11/521 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||||||||||| || || || || ||||| || |||| | ||| Sbjct 1700186 GGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAATCC 1700245 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||| | || | || || ||||| ||||||| || ||||||||||| ||||| || Sbjct 1700246 TGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCAGAGAAGAAAAT 1700305 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCA 119674 || || ||||| || ||||| | || | ||||||||| | | || || | ||| Sbjct 1700306 CCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGATTCAGCACCATCAATCCA 1700365 Query 119675 CTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAG 119734 |||||||| | ||||| || | || |||| ||||| || || ||||| Sbjct 1700366 ACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAG 1700425 Query 119735 TTGCTTCTTTTCAG--CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCA 119792 || |||| || | ||| || || || | || | || |||||| | ||| Sbjct 1700426 ATG--GGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACATTTCA 1700483 Query 119793 CCATGAACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTG 119851 |||| ||||| || | || || || |||| || | ||||||||| | || || Sbjct 1700484 GAGTGAATGTTTTCAATG-GCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTG 1700542 Query 119852 CA-CTTCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGA 119910 | || | ||| || || | || ||| || | ||| || || || ||| | |||| Sbjct 1700543 AACCTCCTTCATGAATCTT-CCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGA 1700601 Query 119911 AGAATGCTAAGATGTACTTTATGAATTTCTGTTCAT-TATCGTT--GAGTGTTTTCCAGT 119967 |||| || | ||||| | ||||| | |||||| | | ||| || |||| ||||| Sbjct 1700602 AGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGT 1700661 Query 119968 CGTCCATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAG 120008 | ||||| || | || || ||||| || |||||| Sbjct 1700662 GACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAG 1700702 >seq2334 Length=5254604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 59/65 (91%), Gaps = 2/65 (3%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC--CG 136774 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| || Sbjct 1150599 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCCTGCG 1150540 Query 136775 TTGGG 136779 ||||| Sbjct 1150539 TTGGG 1150535 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 1174764 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 1174709 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 1559069 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 1559124 >seq2675 Length=6218968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 1260164 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 1260109 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 5816884 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 5816939 >seq2671 Length=3209100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 583023 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 582968 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 961866 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 961921 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 976465 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 976520 >seq2379 Length=3024294 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 2216773 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 2216828 >seq2238 Length=43687 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 27384 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 27329 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 27540 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 27485 >seq996 Length=5324460 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 2573424 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 2573479 >seq728 Length=982821 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 225373 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 225428 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 225529 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 225584 >seq190 Length=2564621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 1938227 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 1938282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588950335370800