Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2390 123 3e-23 seq280 114 2e-20 seq2087 111 2e-19 seq3031 105 8e-18 seq2357 98.7 1e-15 seq1371 95.1 1e-14 seq2675 82.4 9e-11 >seq2390 Length=8026821 Score = 123 bits (136), Expect = 3e-23 Identities = 279/417 (67%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 4596759 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 4596700 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 4596699 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 4596640 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| || | |||| |||| || |||||||| ||||||| || ||||| || || Sbjct 4596639 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGC 4596580 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 4596579 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 4596520 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || || || | || | ||| || | || || || ||| || ||| || ||||| Sbjct 4596519 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 4596461 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGG 9583 || || || |||||||| ||||| |||||| || | || || ||||| || Sbjct 4596460 AGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAGG 4596401 Query 9584 AATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| ||| || | || ||||||| || ||||| ||||||| ||| Sbjct 4596400 GATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCTC 4596344 >seq280 Length=2177796 Score = 114 bits (126), Expect = 2e-20 Identities = 240/355 (68%), Gaps = 2/355 (1%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 1748357 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 1748298 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 1748297 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 1748238 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| || | |||| |||| || |||||||| ||||||| || ||||| || || Sbjct 1748237 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 1748178 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 1748177 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 1748118 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || || || | || | ||| || | || || || ||| || ||| || ||||| Sbjct 1748117 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 1748059 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578 || || || |||||||| || || |||||| || | || ||| ||||| Sbjct 1748058 AGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGGCCAACAAGCAGGACACCC 1748004 >seq2087 Length=2955978 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| |||||||||||||| ||||| | || || ||||| | |||| Sbjct 1897258 TGAGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 1897317 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || |||||||| | | | || || || || ||| |||||| || | || Sbjct 1897318 GACATCAAGTGGTATGTCTTGATGGCCGACTCGATATCATCCTTGTGGATCCCAACAGCA 1897377 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 107346 || | ||| ||||||| || ||| | |||| | | || | || | | ||||| Sbjct 1897378 ACCCTCATCAACATGTGCTGAGGTCTCTCCACAACTGTCCCTTGGACCTTCAGGAGATAT 1897437 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | || ||||||||||||| | ||||||| || || | ||| ||||||| Sbjct 1897438 GATC-TCTCAAGGGTTTTAAAACCAAAGAAATCATAGTCAAAGTCCCG 1897484 >seq3031 Length=105041 Score = 105 bits (116), Expect = 8e-18 Identities = 252/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 94187 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 94130 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | |||| | || || ||||||||||||||||| || ||||| Sbjct 94129 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 94070 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || | ||| || | ||||| | ||| | ||||| || ||||| Sbjct 94069 CAAGGAGCCTTACTCTTC----GCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCAC 94014 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||||||||||| ||||||||| | | || | ||| | ||| || ||| | || Sbjct 94013 ACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCCTC 93954 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| || | |||| || | | ||||| || || || || ||| | |||| | | Sbjct 93953 ACCAGCGACCGCTCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAGGA-GAC 93895 Query 9575 ACCC-CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 |||| ||| || || || || | || ||| | ||||| | ||| | ||| |||| Sbjct 93894 ACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCCA 93835 Query 9634 CAATCTCTTCCAATTC 9649 ||| || | |||||| Sbjct 93834 CAACTTCCTGCAATTC 93819 >seq2357 Length=1489797 Score = 98.7 bits (108), Expect = 1e-15 Identities = 330/502 (66%), Gaps = 14/502 (3%) Strand=Plus/Plus Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250 ||||||||| | ||||| | || | || |||||| | |||| | ||| || || Sbjct 961500 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 961559 Query 9251 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308 || | |||| | |||| || | | | ||| ||||||||||| ||||| | || Sbjct 961560 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 961617 Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366 || ||||| || |||| |||||||| | | | ||| || || | | |||| | | Sbjct 961618 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 961675 Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCA 9425 | || |||||||| |||||||| || ||||| || || | ||| | | || | ||| Sbjct 961676 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTCTTCGCCTTCTCA 961734 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || | ||| | ||||| || |||||||||||||||| ||||||||| | | || Sbjct 961735 AACAAATCCCTCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAAGCT 961794 Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545 | ||| | ||| || ||| | ||||| || | || | || | | ||||| Sbjct 961795 GCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTT 961854 Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCC-CGTGGAATCTTGGCGCCACTTCCAAA 9604 || || || || ||| | |||| | ||||| ||| || || || || | || Sbjct 961855 CCGGTTCCAGGGGGCCCCACAAGGA-GACACCCTTTTGGGATTTTAGCCCCCAATGCAGT 961913 Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTC-ATCTTTGGCGGCGT 9663 ||| | ||||| | ||| | ||| ||||||| || | |||||| | ||| | | | | Sbjct 961914 GTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTG-AT 961972 Query 9664 CAATCCCCTCAACATCGGTAAA 9685 || || ||||||||| ||| Sbjct 961973 CAGCACCGGCAACATCGGCAAA 961994 >seq1371 Length=8752182 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || ||||||||||| ||||| | || || ||||| | |||| Sbjct 2960890 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 2960949 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || ||| |||| | | | || || || || ||| |||||| || | || Sbjct 2960950 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 2961009 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 107346 || | ||| | ||||| || ||| | |||| | | || | || || | | ||||| Sbjct 2961010 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 2961068 Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 | || |||| |||||||||| ||||||| || || | ||| |||||| Sbjct 2961069 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 2961115 >seq2675 Length=6218968 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/189 (71%), Gaps = 8/189 (4%) Strand=Plus/Minus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGAT--TTTCGCGGGCGATTTCAAAGA 9429 ||||||||||||||||| || | |||||| ||| || |||| | | | |||| | Sbjct 1253538 GCATCAATCTCATCAATAAAAATAATACAAGGT-GACCGTTTCTTAGCAGCTG-CAAACA 1253481 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9487 |||| | |||||| |||| || |||||||||||||||||| |||| | ||| | | Sbjct 1253480 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 1253422 Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 || || ||| || || || ||| || ||||| |||| ||| || | ||| || || Sbjct 1253421 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 1253363 Query 9548 CGTACCTGG 9556 ||||| || Sbjct 1253362 AGTACCAGG 1253354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589955091586640