Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq2390 123 3e-23
seq280 114 2e-20
seq2087 111 2e-19
seq3031 105 8e-18
seq2357 98.7 1e-15
seq1371 95.1 1e-14
seq2675 82.4 9e-11
>seq2390
Length=8026821
Score = 123 bits (136), Expect = 3e-23
Identities = 279/417 (67%), Gaps = 2/417 (0%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | || || || || | |||| ||||| || | | |||||
Sbjct 4596759 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 4596700
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | ||| || || | || ||||||| ||||||||| || |
Sbjct 4596699 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 4596640
Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404
|||| || | |||| |||| || |||||||| ||||||| || ||||| || ||
Sbjct 4596639 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGC 4596580
Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464
|||||| || | | || |||||||| || | || |||||||||||||||
Sbjct 4596579 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 4596520
Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523
|| || || || | || | ||| || | || || || ||| || ||| || |||||
Sbjct 4596519 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 4596461
Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGG 9583
|| || || |||||||| ||||| |||||| || | || || ||||| ||
Sbjct 4596460 AGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAGG 4596401
Query 9584 AATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640
|| ||| ||| || | || ||||||| || ||||| ||||||| |||
Sbjct 4596400 GATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCTC 4596344
>seq280
Length=2177796
Score = 114 bits (126), Expect = 2e-20
Identities = 240/355 (68%), Gaps = 2/355 (1%)
Strand=Plus/Minus
Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284
||||| || || | | || || || || | |||| ||||| || | | |||||
Sbjct 1748357 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 1748298
Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344
||||||||||| || | ||| || || | || ||||||| ||||||||| || |
Sbjct 1748297 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 1748238
Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404
|||| || | |||| |||| || |||||||| ||||||| || ||||| || ||
Sbjct 1748237 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 1748178
Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464
|||||| || | | || |||||||| || | || |||||||||||||||
Sbjct 1748177 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 1748118
Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523
|| || || || | || | ||| || | || || || ||| || ||| || |||||
Sbjct 1748117 ATTTCAACGAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 1748059
Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC 9578
|| || || |||||||| || || |||||| || | || ||| |||||
Sbjct 1748058 AGCCTTAGCCAGTAGAGTCTTTCCTGTCCCTGGCGGGCCAACAAGCAGGACACCC 1748004
>seq2087
Length=2955978
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || |||||||| |||||||||||||| ||||| | || || ||||| | ||||
Sbjct 1897258 TGAGGCCTTGGTGTGCCAGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 1897317
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| || |||||||| | | | || || || || ||| |||||| || | ||
Sbjct 1897318 GACATCAAGTGGTATGTCTTGATGGCCGACTCGATATCATCCTTGTGGATCCCAACAGCA 1897377
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 107346
|| | ||| ||||||| || ||| | |||| | | || | || | | |||||
Sbjct 1897378 ACCCTCATCAACATGTGCTGAGGTCTCTCCACAACTGTCCCTTGGACCTTCAGGAGATAT 1897437
Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394
| || ||||||||||||| | ||||||| || || | ||| |||||||
Sbjct 1897438 GATC-TCTCAAGGGTTTTAAAACCAAAGAAATCATAGTCAAAGTCCCG 1897484
>seq3031
Length=105041
Score = 105 bits (116), Expect = 8e-18
Identities = 252/376 (67%), Gaps = 14/376 (4%)
Strand=Plus/Minus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| |
Sbjct 94187 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 94130
Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398
| | ||| || || | | |||| | || || ||||||||||||||||| || |||||
Sbjct 94129 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 94070
Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454
|| || || | ||| || | ||||| | ||| | ||||| || |||||
Sbjct 94069 CAAGGAGCCTTACTCTTC----GCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCAC 94014
Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514
||||||||||| ||||||||| | | || | ||| | ||| || ||| | ||
Sbjct 94013 ACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCCTC 93954
Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574
||| || | |||| || | | ||||| || || || || ||| | |||| | |
Sbjct 93953 ACCAGCGACCGCTCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGCCCCACAAGGA-GAC 93895
Query 9575 ACCC-CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633
|||| ||| || || || || | || ||| | ||||| | ||| | ||| ||||
Sbjct 93894 ACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCCA 93835
Query 9634 CAATCTCTTCCAATTC 9649
||| || | ||||||
Sbjct 93834 CAACTTCCTGCAATTC 93819
>seq2357
Length=1489797
Score = 98.7 bits (108), Expect = 1e-15
Identities = 330/502 (66%), Gaps = 14/502 (3%)
Strand=Plus/Plus
Query 9191 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9250
||||||||| | ||||| | || | || |||||| | |||| | ||| || ||
Sbjct 961500 ACGATCAAACCTCCCTGGCCTCAGCAAAGCAGAATCAAGAACATCAGGCCTATTAGTGGC 961559
Query 9251 GGCGATGACAACAATACCTG--TTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9308
|| | |||| | |||| || | | | ||| ||||||||||| ||||| | ||
Sbjct 961560 AGCCAAAACAATCACTCCTGAATTCCCTGA--AAACCCATCCATCTCAGTCAACAACTGA 961617
Query 9309 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTC 9366
|| ||||| || |||| |||||||| | | | ||| || || | | |||| | |
Sbjct 961618 TTGATAGTCTGCTCCCTCTCATCATTTCC--ACCTCCCATTCCTGCTCCTCTTTGCCTCC 961675
Query 9367 CCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGC-GGGCGATTTCA 9425
| || |||||||| |||||||| || ||||| || || | ||| | | || | |||
Sbjct 961676 CAACAGCATCAATTTCATCAATAAACACAATGCAAGG-CGCTTTACTCTTCGCCTTCTCA 961734
Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485
|| | ||| | ||||| || |||||||||||||||| ||||||||| | | ||
Sbjct 961735 AACAAATCCCTCACCCTGGAAGCTCCCACACCAACAAACAGCTCCACAAACTCCGAAGCT 961794
Query 9486 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9545
| ||| | ||| || ||| | ||||| || | || | || | | |||||
Sbjct 961795 GCACACGAAAAGAACGGCACACCGGCCTCACCAGCGACCGCCCTCGCCAACAATGTCTTT 961854
Query 9546 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCC-CGTGGAATCTTGGCGCCACTTCCAAA 9604
|| || || || ||| | |||| | ||||| ||| || || || || | ||
Sbjct 961855 CCGGTTCCAGGGGGCCCCACAAGGA-GACACCCTTTTGGGATTTTAGCCCCCAATGCAGT 961913
Query 9605 GTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTC-ATCTTTGGCGGCGT 9663
||| | ||||| | ||| | ||| ||||||| || | |||||| | ||| | | | |
Sbjct 961914 GTACTTATCAGGGTTCTTCAAAAAGTCCACAACTTCCTGCAATTCTAGCTTAGCCTG-AT 961972
Query 9664 CAATCCCCTCAACATCGGTAAA 9685
|| || ||||||||| |||
Sbjct 961973 CAGCACCGGCAACATCGGCAAA 961994
>seq1371
Length=8752182
Score = 95.1 bits (104), Expect = 1e-14
Identities = 161/228 (71%), Gaps = 4/228 (2%)
Strand=Plus/Plus
Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227
|| || |||||||| || ||||||||||| ||||| | || || ||||| | ||||
Sbjct 2960890 TGAGGCCTTGGTGTGCCCGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 2960949
Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287
|||||| || ||| |||| | | | || || || || ||| |||||| || | ||
Sbjct 2960950 GACATCAAGTGGTACGTCTTGATGGCCGATTCGATATCATCCTTGTGGATCCCAACAGCA 2961009
Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGT-TGAAGATA 107346
|| | ||| | ||||| || ||| | |||| | | || | || || | | |||||
Sbjct 2961010 ACCCTCATCAGCATGTGCTGCGGTCTCTCCACAACCGT-CCCTTGAACCTTCAGGAGATA 2961068
Query 107347 -GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393
| || |||| |||||||||| ||||||| || || | ||| ||||||
Sbjct 2961069 TGATC-TCTCGAGGGTTTTGAAACCAAAGAAATCATAGTCAAAGTCCC 2961115
>seq2675
Length=6218968
Score = 82.4 bits (90), Expect = 9e-11
Identities = 135/189 (71%), Gaps = 8/189 (4%)
Strand=Plus/Minus
Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGAT--TTTCGCGGGCGATTTCAAAGA 9429
||||||||||||||||| || | |||||| ||| || |||| | | | |||| |
Sbjct 1253538 GCATCAATCTCATCAATAAAAATAATACAAGGT-GACCGTTTCTTAGCAGCTG-CAAACA 1253481
Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGT--TTGCGGCGGA 9487
|||| | |||||| |||| || |||||||||||||||||| |||| | ||| | |
Sbjct 1253480 GATCTCTAACCCTCCTGGCTCCAACACCAACAAACATCTCCTCAAACTCACTGCCACTG- 1253422
Query 9488 ACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547
|| || ||| || || || ||| || ||||| |||| ||| || | ||| || ||
Sbjct 1253421 -CAAGAGAAGAAAGGTACTCCAGCTTCTCCAGCAATAGCTCTGGCTAGCATAGTTTTTCC 1253363
Query 9548 CGTACCTGG 9556
||||| ||
Sbjct 1253362 AGTACCAGG 1253354
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589955091586640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |