Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2087 192 7e-44 seq1371 168 8e-37 >seq2087 Length=2955978 Score = 192 bits (212), Expect = 7e-44 Identities = 595/910 (65%), Gaps = 22/910 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | | || || | Sbjct 718713 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 718772 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| |||| ||||| || | || || | |||| | | || | | | Sbjct 718773 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAA 718832 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || ||||| | ||| || |||||| ||||| ||||| || | | Sbjct 718833 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 718892 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || || ||||| || | || ||| | || |||| ||||| || | || Sbjct 718893 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 718952 Query 18909 AGATACAACTCTATCTTCATT-AGGAGGGTAT--AG-AAGATGTTTAAACATCAAACATG 18964 ||| | || || | || | | || ||| ||| ||| || ||| | Sbjct 718953 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 719008 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| |||||||| || || ||||||| ||||| || || || || |||||||| | Sbjct 719009 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 719068 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA-AAGAATATA 19083 |||| || || | ||||| | |||||| || || ||||| ||| | | ||||| || Sbjct 719069 GCATTAGCCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 719127 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| || |||||||||| || || || || ||| | ||| | || |||| Sbjct 719128 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AACGAT--TCAGCACCATCAATC 719184 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || ||||||||||||||||| || ||||| || || || || || | | ||| Sbjct 719185 CAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAA 719244 Query 19204 AGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | | | |||||| | ||| | |||| | | | ||||||| Sbjct 719245 AGATGGGTTTTAAGGTTA---GAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATT 719301 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || ||||| ||||| || || || || || || || ||| | ||||| | | | Sbjct 719302 TCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACC 719361 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || || || | |||||| || | | ||| || |||||| || ||| || || Sbjct 719362 TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCG 719421 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTATTCCAA 19437 || || || | | || | || ||||| | ||| || |||||||| || | ||| Sbjct 719422 AAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAG 719481 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | || ||||| || | ||| |||||||| | ||||| || ||||| || |||||| Sbjct 719482 TGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTT 719541 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 || ||||| | ||| || | | |||| || || || ||| ||||||| | ||| Sbjct 719542 TTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTT 719601 Query 19558 TCTTTAAGAA 19567 ||| | |||| Sbjct 719602 TCTGTGAGAA 719611 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | |||||| ||||||| || | || | | ||| |||||||| ||| Sbjct 1896914 CCTCCTTGGTCAACATATCTTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCA 1896973 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || |||||||||||| | || | || || | ||| Sbjct 1896974 TTTGATGTCCCATTAGTACCGCGTATATAACTTCCAGTGGCACGAATGTTGTGCACAGAA 1897033 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || || || | ||||||| || || |||||||||||| Sbjct 1897034 ACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAAATT 1897093 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||| ||| |||| || | || || || ||| Sbjct 1897094 CCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 1897135 >seq1371 Length=8752182 Score = 168 bits (186), Expect = 8e-37 Identities = 412/615 (67%), Gaps = 16/615 (3%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || || ||||||| ||||| || || || || ||||| Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAA 19079 || ||||||| || | ||||| | |||||| || | |||| || |||||| ||||| Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGAT-GGAGCAGAAACTTCCAGAGAAGAA 1700302 Query 19080 TATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATG 19139 || ||||| || |||||||||| || || || || ||| | ||| | || Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCA-AAC--GATTCAGCACCATC 1700359 Query 19140 AATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATT 19199 |||||| || ||||||||||||||||| || ||||| || || || || || | | Sbjct 1700360 AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACG 1700419 Query 19200 AAATAGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| |||| || | | | | |||||| | || | |||| | | | ||| Sbjct 1700420 AAAAAGATGGGTTTTAAGGTTA---GAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTA 1700476 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| || ||||| ||||| || || || || || || || ||| | ||||| | Sbjct 1700477 CATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGC 1700536 Query 19317 TATCTGTACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAG 19375 | ||| || || || || |||||| || | | ||| || ||| || || || | Sbjct 1700537 AACCTGAACCTC-CTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATG 1700595 Query 19376 CTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTAT 19432 | || || || || | | || | || ||||| | ||| || | |||||| || | Sbjct 1700596 CGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTT 1700655 Query 19433 TCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTG 19492 ||| | | || ||||| || | ||| |||||||| | ||||| || ||||| || | Sbjct 1700656 CCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAG 1700715 Query 19493 CTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTT 19552 ||||||| ||||| | ||| || | | |||| || || || ||| ||||||| | Sbjct 1700716 CTTTTTTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTG 1700775 Query 19553 TATTTTCTTTAAGAA 19567 |||||| | |||| Sbjct 1700776 GGTTTTCTGTGAGAA 1700790 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||| || || | ||||| ||||||| ||| | || | | ||| |||||||| ||| Sbjct 2960554 CCTCCCTGGTCAACATATCGTGCAGTATCATTAAACACCCGCAGCATAGGGACAATGCCA 2960613 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || |||||||||||| | || | || || | ||| Sbjct 2960614 TTTGATGTCCCATTAGTACCACGTATATAACTTCCAGTGGCACGGATGTTGTGCACAGAA 2960673 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | || ||||| || || ||| || | ||||||| || || |||||||| || Sbjct 2960674 ACCCCAATACCTCCAGCAGATTTGCTGATAACAGCACACTCCTTCAGAGTATCATATATC 2960733 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||||||| |||| || | || || || ||| Sbjct 2960734 CCTTCAATGCTATCATCTTTCATGTTGATAAGGAAGCAGCTA 2960775 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 46977 TCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACCAGTC 47036 |||||||| ||||| || | || | |||| | |||| | |||||| ||||| || ||| Sbjct 2958177 TCCACAGTGAACTTGATAGCATCAGCAGCTGCTCTTGTCCTTAAATAGTACATGCCTGTC 2958236 Query 47037 TTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCT 47096 || ||||| | |||| ||| ||| |||| | ||||| || || | |||| | Sbjct 2958237 TTCAAACCCTTAGACCATGCATGGAAGTGCAGAGAGGTTAACTTTCCGAAATTGGGTTGT 2958296 Query 47097 GAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATA 47156 | ||||||||||| || |||||| ||||| || || |||| |||| | |||||| Sbjct 2958297 GTCATATGAATATTTAGGCTTTGACTTTGATCGATGAAACATCCTCGATCAACAGCCATA 2958356 Query 47157 TC 47158 || Sbjct 2958357 TC 2958358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084306109040