Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq1371 120 4e-22
>seq1371
Length=8752182
Score = 120 bits (132), Expect = 4e-22
Identities = 254/373 (68%), Gaps = 7/373 (2%)
Strand=Plus/Plus
Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235
|| ||||||||||| || | ||||| |||| ||||| || || || |||||||||
Sbjct 1700184 CAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAT 1700243
Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCA-AAAGATCCAGAAAAGAA 37294
|||||||| || || | ||||| | ||| || | || ||| ||| |||||| |||||
Sbjct 1700244 CCTGGCATCAACCCACGCTTTTTGAGCCAGAAGA-TGGAGCAGAAACTTCCAGAGAAGAA 1700302
Query 37295 AATACCTTCAACTGCTGCAAATGCTACAAGACGTGT-ACCGAAAGTTGAACTATAATCAG 37353
||| |||||||| ||||| || | | || | | | | || | | | | |||
Sbjct 1700303 AATCCCTTCAACACAAGCAAAAGCAATTA-ACCTCTCAGCAAACGATTCAGCACCATC-- 1700359
Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413
|||||| | |||||| ||||| |||||||| || |||||||||||
Sbjct 1700360 -AATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 1700418
Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473
|| ||| | |||| | | |||| | || ||||| || | || | | ||||
Sbjct 1700419 GAAAAAGATGGGTTTTAAGGTTAGAATCTTTGATGTAAGTTTCTAAAAGAAGAGAGTACA 1700478
Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533
||||||||||||| |||||||| || || || || ||||| ||| | |||||||| |
Sbjct 1700479 TTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAA 1700538
Query 37534 ATTGAACATCGTT 37546
||||| || ||
Sbjct 1700539 CCTGAACCTCCTT 1700551
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592290989795440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |