Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1371 114 2e-20 seq2087 100 5e-16 >seq1371 Length=8752182 Score = 114 bits (126), Expect = 2e-20 Identities = 374/572 (65%), Gaps = 18/572 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||||||||| || | ||| | |||||||| || || ||| |||| ||| Sbjct 1700175 TATAGCAGGCAGGCAAAATCACAGTGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAG 1700234 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| | || ||||| | ||| | || |||||||||||| || | |||| ||| Sbjct 1700235 AAGGTTAATCCTGGCATCAACCCACGCTTTTTGAGCCAGAAGATGGAGCAGAAACTTCCA 1700294 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 |||||||| || || || || || || || | | |||||| | || || ||| Sbjct 1700295 GAGAAGAAAATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAACGA----TTC 1700350 Query 48302 TTGTC--TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCT 48359 | | | ||||| ||| ||||| || ||||||||||| | || || || || | Sbjct 1700351 AGCACCATCA-ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTT 1700409 Query 48360 CTATGGCCCGGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCA 48416 | || || || || || | | || | | | || | || || | | Sbjct 1700410 CAATTGCACGAAAAAGATGGGTTTTAAGGTTA---GAATCTTTGATGTAAGTTTCTAAAA 1700466 Query 48417 GCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCC 48476 | | |||||| |||||||| | || || || ||||| ||||| || ||||| || | Sbjct 1700467 GAAGAGAGTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGC 1700526 Query 48477 TGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATC 48535 || ||| ||||| || || | |||||| ||| || |||||||| || || Sbjct 1700527 GAGCTTCAGCAACCTGAACCTCCTTCATGAATCT-TCCGGCGAGATTCTCGAGAACGATG 1700585 Query 48536 CCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTG-TGGGT 48594 || ||||| || || |||||||| |||| || | | |||||| | |||| | ||| | Sbjct 1700586 CCGTCTGATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTT 1700645 Query 48595 GAGAGCATT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAG 48652 ||| || |||| | || |||| || || |||||||| |||||||||| Sbjct 1700646 AAGATGGTTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAAT 1700705 Query 48653 GACGCGAGTGCTTTTTTGTACATGCCCCATAT 48684 || || |||||||||||||| |||| || Sbjct 1700706 GAAGCTTCAGCTTTTTTGTACATTTCCCAGAT 1700737 >seq2087 Length=2955978 Score = 100 bits (110), Expect = 5e-16 Identities = 184/265 (69%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| |||||||| | || || || ||||| ||||| || ||||| || | || || Sbjct 719295 GTACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTC 719354 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | ||||| || ||| | |||||| ||| || |||||||| ||||| || || | Sbjct 719355 AGCAACCTGGACCTCTTTCATGAATCT-TCCGGCGAGATTCTCGAGAACTATGCCGTCAG 719413 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA-GAGCA 48601 | || || |||||||| |||| || | | |||||| | |||| | ||| | || Sbjct 719414 ATGCGGCGAAGAAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGG 719473 Query 48602 TT--CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGA 48659 || |||| | || |||| || || |||||||| |||||||||| || || Sbjct 719474 TTTCCCAGTGACGAACATCTTGCGAAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTT 719533 Query 48660 GTGCTTTTTTGTACATGCCCCATAT 48684 |||||||||||||| |||| || Sbjct 719534 CAGCTTTTTTGTACATTTCCCAGAT 719558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931492208458240