Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_019929.1 Length=243050 Score E Sequences producing significant alignments: (Bits) Value seq2390 91.5 2e-13 seq2036 91.5 2e-13 seq1371 91.5 2e-13 seq2094 89.7 8e-13 seq2 86.0 1e-11 >seq2390 Length=8026821 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 6828226 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 6828168 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 6828167 CCCCGTCAGTCC 6828156 >seq2036 Length=12398513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 8971968 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 8972026 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 8972027 CCCCGTCAGTCC 8972038 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || |||| |||||| Sbjct 8977590 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGATTCGAG 8977648 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 8977649 CCCCGTCAGTCC 8977660 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || |||| |||||| Sbjct 8983219 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGATTCGAG 8983277 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 8983278 CCCCGTCAGTCC 8983289 >seq1371 Length=8752182 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 2454624 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 2454682 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 2454683 CCCCGTCAGTCC 2454694 >seq2094 Length=1489424 Score = 89.7 bits (98), Expect = 8e-13 Identities = 63/71 (89%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| ||||| ||||| ||||||||||| |||||| || ||||||||||| Sbjct 263883 GGATTGTAGTTCAATTGGT-TAGAGCACCGCCCTGTCAAGGCGGAAGTTGCGGGTTCGAG 263825 Query 169788 CCCCGTCAGTC 169798 ||||||||||| Sbjct 263824 CCCCGTCAGTC 263814 >seq2 Length=8241039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 169728 GGATTGTAGCTCAGTTGGTCTAGAGTGCCGCCCTGTCACGGCGGAGGTCGCGGGTTCGAG 169787 ||||||||| ||| |||||| |||| ||||||||||| |||||| | ||||||||||| Sbjct 5454911 GGATTGTAGTTCAATTGGTC-AGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAG 5454853 Query 169788 CCCCGTCAGTCC 169799 |||||||||||| Sbjct 5454852 CCCCGTCAGTCC 5454841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 777598114685600