Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11]
3,486 sequences; 1,333,398,936 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq2164 96.9 3e-15
seq3320 91.5 1e-13
seq1717 91.5 1e-13
seq3251 82.4 6e-11
seq2390 82.4 6e-11
>seq2164
Length=10083965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609
||||||||| || || || ||||| |||||||||||||||| ||| ||| ||| |
Sbjct 642411 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 642470
Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
|| || || | | | || |||| || ||| |||||||| || | || |||
Sbjct 642471 CTCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 642530
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
||||| | || ||||| || || ||||| | |||||| ||| | ||||||||
Sbjct 642531 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTA 642590
Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757
|||||||| || ||||| ||||| |||
Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCAC 642618
>seq3320
Length=4692610
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609
||| ||||| || || || ||||| |||| || |||||||| ||| ||| ||| |
Sbjct 1079516 AAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATC 1079575
Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
|| || || | | | || |||| || ||| |||||||| || | || |||
Sbjct 1079576 ATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1079635
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
|||||| | | |||||||| || ||||||||||||||| | ||| | || |||||
Sbjct 1079636 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1079695
Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|| ||||| || ||||| || || || ||||
Sbjct 1079696 CAAAATTCAGAAGGAATCGACGCTTCATCTGGT 1079728
>seq1717
Length=9716283
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609
||| ||||| || || || ||||| |||| || |||||||| ||| || ||| |
Sbjct 1668750 AAATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATC 1668691
Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
|| || || | | | || |||| || ||| |||||||| || | || |||
Sbjct 1668690 ATCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1668631
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
|||||| | | |||||||| || ||||||||||||||| | ||| | || |||||
Sbjct 1668630 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1668571
Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||||||| || ||||| || || || ||||
Sbjct 1668570 CAACATTCAGAAGGAATCGACGCTTCATTTGGT 1668538
>seq3251
Length=7052893
Score = 82.4 bits (90), Expect = 6e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706
||||| ||||| | ||| ||| || ||||| || |||||||| || || ||||||||
Sbjct 3480388 GACAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAG 3480329
Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756
||| | ||| |||| ||||| ||||||||||| || ||||| || ||
Sbjct 3480328 GATGGTCGAACCTTGGCTGATTACAACATTCAAAAGGAGTCTACCCTCCA 3480279
>seq2390
Length=8026821
Score = 82.4 bits (90), Expect = 6e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609
||||||||| || || || ||||| |||||||||||||||| ||| || ||| |
Sbjct 2843227 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 2843168
Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669
|| || || | | | || |||| || ||| |||||||| ||| | || |||
Sbjct 2843167 CTCGGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGA 2843108
Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729
||||| | || || || || || ||||| | |||||| ||| | ||||| ||
Sbjct 2843107 CCAACAACGTCTCATTTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 2843048
Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757
||||| || || ||||| ||||| |||
Sbjct 2843047 CAACATCCAGAAGGAATCGACTCTTCAC 2843020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425386726411194
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |