Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2164 96.9 3e-15 seq3320 91.5 1e-13 seq1717 91.5 1e-13 seq3251 82.4 6e-11 seq2390 82.4 6e-11 >seq2164 Length=10083965 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| || || || ||||| |||||||||||||||| ||| ||| ||| | Sbjct 642411 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 642470 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 642471 CTCGGACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 642530 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | || ||||| || || ||||| | |||||| ||| | |||||||| Sbjct 642531 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTA 642590 Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || ||||| ||||| ||| Sbjct 642591 CAACATTCAGAAGGAATCCACTCTTCAC 642618 >seq3320 Length=4692610 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| || |||||||| ||| ||| ||| | Sbjct 1079516 AAAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATC 1079575 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 1079576 ATCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1079635 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 1079636 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1079695 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 || ||||| || ||||| || || || |||| Sbjct 1079696 CAAAATTCAGAAGGAATCGACGCTTCATCTGGT 1079728 >seq1717 Length=9716283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| || |||||||| ||| || ||| | Sbjct 1668750 AAATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATC 1668691 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 1668690 ATCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 1668631 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 1668630 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 1668571 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || ||||| || || || |||| Sbjct 1668570 CAACATTCAGAAGGAATCGACGCTTCATTTGGT 1668538 >seq3251 Length=7052893 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| ||||| | ||| ||| || ||||| || |||||||| || || |||||||| Sbjct 3480388 GACAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTCATCTTTGCTGGGAAGCAATTGGAG 3480329 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCA 28756 ||| | ||| |||| ||||| ||||||||||| || ||||| || || Sbjct 3480328 GATGGTCGAACCTTGGCTGATTACAACATTCAAAAGGAGTCTACCCTCCA 3480279 >seq2390 Length=8026821 Score = 82.4 bits (90), Expect = 6e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| || || || ||||| |||||||||||||||| ||| || ||| | Sbjct 2843227 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 2843168 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| ||| | || ||| Sbjct 2843167 CTCGGACACAATCGACAATGTCAAAGCCAAGATCCAAGACAAAGAAGGAATCCCACCAGA 2843108 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | || || || || || ||||| | |||||| ||| | ||||| || Sbjct 2843107 CCAACAACGTCTCATTTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 2843048 Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757 ||||| || || ||||| ||||| ||| Sbjct 2843047 CAACATCCAGAAGGAATCGACTCTTCAC 2843020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425386726411194