Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2390 120 4e-22 seq2087 116 4e-21 seq280 114 2e-20 seq1371 100 3e-16 seq3031 96.9 4e-15 seq2357 87.8 2e-12 >seq2390 Length=8026821 Score = 120 bits (132), Expect = 4e-22 Identities = 281/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| ||||||| ||||| || |||| || || | | || ||| ||| ||||| Sbjct 4596344 GAGGTTGTGGAATTTCTGAAAAAACCTGAAAGGTTTACTGCTGTTGGAGCCCGCATCCCT 4596403 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | || || | || |||||| ||||||||||| || || || || || Sbjct 4596404 AAGGGTGTTCTGCTTGTTGGCCCGCCAGGGACGGGAAAGACTCTACTGGCTAAGGCTATT 4596463 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| | ||| || || || || | |||| || | || || || |||| Sbjct 4596464 GCTGGAGAAGCTGGTGTTCCTTTTTTCTCCATT--TCTGGGTCAGAGTTCGTTGAAATGT 4596521 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 ||||||||||||| || | || |||||||| || | | || |||||| | Sbjct 4596522 TTGTTGGTGTGGGAGCATCTCGAGTGCGCGATCTTTTCAAGAAGGCAAAAGAAAATGCGC 4596581 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | || ||||| || ||||||| |||||||| || || | |||| || | | ||| | Sbjct 4596582 CTTGCATTGTGTTTGTTGATGAAATTGATGCAGTAGGAAGGCAA---AGAGGTACTGGAA 4596638 Query 175529 T---GCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | || |||||| || || ||||| ||| | ||||| || || || |||||||||| Sbjct 4596639 TCGGGGGAGGAAATGATGAAAGGGAACAGACATTGAATCAGCTTCTAACTGAGATGGATG 4596698 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 ||||||| | | ||||| || | ||| |||| || ||||| | | || || |||| Sbjct 4596699 GCTTTGAGGGTAACACTGGTATCATTGTTGTTGCTGCAACTAACAGGGCAGACATTCTTG 4596758 Query 175646 A 175646 | Sbjct 4596759 A 4596759 >seq2087 Length=2955978 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 ||||||| ||| | || || ||||||| | ||||||||||||| || | ||||| | Sbjct 1897484 CGGGACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGA-GATCATATCTCCTGAA 1897426 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||| | || ||| ||||||| ||| |||| || | || || Sbjct 1897425 GGTCCAAGGGACAGTTGTGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGAT 1897366 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || || || || | | | |||||||| || |||||||||| | ||| Sbjct 1897365 CCACAAGGATGATATCGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTT 1897306 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || || | ||||| |||||||||||||| |||||||| || || Sbjct 1897305 CACCCATGCTTCTCCAACTCTCTTCAATGCTGGCACACCAAGGCCTCA 1897258 >seq280 Length=2177796 Score = 114 bits (126), Expect = 2e-20 Identities = 230/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 |||||| || |||||||| || || || || || || || ||| | ||| || || Sbjct 1748025 GCCAGGGACAGGAAAGACTCTACTGGCTAAGGCTATTGCTGGAGAAGCTGGTGTTCCTTT 1748084 Query 175374 CATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGG 175431 || || | |||| || | || || || ||||||||||||||||| || | Sbjct 1748085 TTTCTCCATT--TCTGGGTCAGAGTTCGTTGAAATGTTTGTTGGTGTGGGAGCATCTCGA 1748142 Query 175432 GTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAG 175491 || |||||||| || | | || |||||| || || ||||| || ||||||| Sbjct 1748143 GTGCGCGATCTTTTCAAGAAGGCAAAAGAAAATGCTCCTTGCATTGTGTTTGTTGATGAA 1748202 Query 175492 ATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTAT---GCCAGCAAATGACGAGAGA 175548 |||||||| || || | |||| || | | ||| || | || |||||| || || Sbjct 1748203 ATTGATGCAGTAGGAAGGCAA---AGAGGTACTGGAATCGGGGGAGGAAATGATGAAAGG 1748259 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATT 175608 ||||| ||| | ||||| || || || ||||||||||||||||| | | ||||| || Sbjct 1748260 GAACAGACATTGAATCAGCTTCTAACTGAGATGGATGGCTTTGAGGGTAACACTGGTATC 1748319 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | ||| |||| || ||||| | | || || ||||| Sbjct 1748320 ATTGTTGTTGCTGCAACTAACAGGGCAGACATTCTTGA 1748357 >seq1371 Length=8752182 Score = 100 bits (110), Expect = 3e-16 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCA-ACG 75186 |||||| ||| | || || ||||||| |||||||||| |||| || | ||||| | | | Sbjct 2961115 GGGACTTTGACTATGATTTCTTTGGTTTCAAAACCCTCGAGA-GATCATATCTCCTGAAG 2961057 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||| | || ||| ||||| | ||| |||| || | || || Sbjct 2961056 GTTCAAGGG-ACGGTTGTGGAGAGACCGCAGCACATGCTGATGAGGGTTGCTGTTGGGAT 2960998 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || || || || | | | |||| ||| || |||||||||| | ||| Sbjct 2960997 CCACAAGGATGATATCGAATCGGCCATCAAGACGTACCACTTGATGTCCCAAAGGTGGTT 2960938 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || || | ||||| ||||||||||| || |||||||| || || Sbjct 2960937 CACCCATGCTTCTCCAACTCTCTTCAATGCGGGCACACCAAGGCCTCA 2960890 >seq3031 Length=105041 Score = 96.9 bits (106), Expect = 4e-15 Identities = 192/282 (68%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || |||||||| | | || |||| |||| ||||| | ||| || ||| Sbjct 93912 CCTGGAACCGGAAAGACATTGTTGGCGAGAGCGGTCGCTGGTGAGGCCGGTGTGCCGTTC 93971 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 | ||| | || | | ||||||||| |||||||||||||||| || ||||| Sbjct 93972 TTTTCGTGTGCAGCTTCTGAGTTTGTGGAGCTGTTTGTTGGTGTGGGAGCTTCCAGGGTG 94031 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | ||||| | || || || ||||| || |||||||| Sbjct 94032 AGGGATTTGTTTGA----GAAGGCGAAGAGTAAGGCTCCTTGCATTGTGTTTATTGATGA 94087 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| || || | |||| | | || || ||| | | | |||||| ||||| Sbjct 94088 GATTGATGCTGTTGGGAGGCAAAGAGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGG 94145 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| || || ||||| | | || ||||||||||| ||| Sbjct 94146 GAACAGACTATCAATCAGTTGTTGACTGAGATGGATGGGTTT 94187 >seq2357 Length=1489797 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGC- 175454 ||||||||| |||||||||||||||| || ||||| | ||| | ||||| | || Sbjct 961784 TTTGTGGAGCTGTTTGTTGGTGTGGGAGCTTCCAGGGTGAGGGATTTGTTTGAGAAGGCG 961725 Query 175455 CCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACG 175514 | | ||| | || || ||||| || |||||||| |||||||| || || | |||| | Sbjct 961724 AAGAGTAAAGC-GCCTTGCATTGTGTTTATTGATGAAATTGATGCTGTTGGGAGGCAAAG 961666 Query 175515 CAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTC 175572 | || || ||| | | | |||||| ||||| || || || || ||||| | | Sbjct 961665 AGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGGGAGCAGACTATCAATCAGTTGTTG 961608 Query 175573 ACCGAGATGGATGGCTTT 175590 || ||||||||||| ||| Sbjct 961607 ACTGAGATGGATGGGTTT 961590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596543604479680