Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq1371 120 4e-21 seq2087 107 2e-17 >seq1371 Length=8752182 Score = 120 bits (132), Expect = 4e-21 Identities = 188/265 (71%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||| ||||| || |||||||| |||||||| || || || | | || || || || Sbjct 1700484 GAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGA 1700543 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| | ||||| || |||||| ||||||||||| |||||||| Sbjct 1700544 ACCTCCTTCATGAATCTTCCGGCGAGATTCTCGAGAACGATGCCGTCTGATGCGGCGAAG 1700603 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCT---GAGCGACACCCAGTG- 869808 || || |||| ||| |||| || || | |||||| | | || | ||||||| Sbjct 1700604 AAGGCGAGGATGTGGGTGATGAAATGCTGTTCGTCGGTGGTTAAGATGGTTTCCCAGTGA 1700663 Query 869809 -GACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || | | ||| || || || || ||||| ||||||| || || || || |||| Sbjct 1700664 CGAACATCT-TGCG-AAAGATCGACTTCTTCGGCAGTCCAGAATGAAGCTTCAGCTTTTT 1700721 Query 869868 TGTACATCTCCCATACTTGCTGGTA 869892 ||||||| ||||| | ||| |||| Sbjct 1700722 TGTACATTTCCCAGATTTGTGGGTA 1700746 Score = 98.7 bits (108), Expect = 1e-14 Identities = 156/224 (70%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || | | ||| || || || ||||| || | || ||||||||||||||| Sbjct 1699899 TACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATC 1699958 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||||||||| | ||| |||||| || || || | || | ||| | Sbjct 1699959 CAATCGAACGGGTTCTGAACTCCGTAAACCTTTTCACACCCAAGTGCAGCCAACAGCCTA 1700018 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| |||||||| | ||| || | |||||| || | ||| |||| Sbjct 1700019 TCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACC 1700078 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || |||| ||| | || |||||| |||||| ||||| || || Sbjct 1700079 GGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATC 1700122 >seq2087 Length=2955978 Score = 107 bits (118), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 ||||| || || | | ||| || || || ||||| || | || ||||||||||||||| Sbjct 718720 TACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATC 718779 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCGG 868819 || ||| ||||| | ||| ||||||||| ||||||| || | ||| | | Sbjct 718780 CAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGCACCCGAGCGCAGCCAACAGTCTG 718839 Query 868820 TCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCACC 868879 || || |||||||| |||||||| | ||| || | |||||| || | ||| |||| Sbjct 718840 TCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACC 718899 Query 868880 GGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTC 868923 || |||| || | || |||||| |||||| ||||| || || Sbjct 718900 GGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATC 718943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106853122515062