Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq1717 104 2e-17 seq3320 100 2e-16 seq1776 95.1 1e-14 seq607 93.3 3e-14 seq374 93.3 3e-14 seq530 91.5 1e-13 seq2164 89.7 4e-13 seq863 89.7 4e-13 seq3251 87.8 1e-12 >seq1717 Length=9716283 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||| || |||||||| ||| | || || | Sbjct 1668749 AATATGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCA 1668690 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 1668689 TCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1668630 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || ||||| |||| |||| |||||| | || |||||| Sbjct 1668629 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 1668570 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||||| || ||||| ||| | || ||||| | |||| || ||||| Sbjct 1668569 AACATTCAGAAGGAATCGACGCTTCATTTGGTGCTTCGACTTCGTGGGGG 1668520 >seq3320 Length=4692610 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| |||| || |||||||| ||| | ||| || | Sbjct 1079517 AAGATGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCA 1079576 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 || || ||| | | || ||| ||||| |||||||||||| | || ||| Sbjct 1079577 TCGGACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGAT 1079636 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 |||||| | | || | ||| || ||||| |||| |||| |||||| | || |||||| Sbjct 1079637 CAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTAC 1079696 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || ||||| || ||||| ||| | || ||||| | |||| || ||||| Sbjct 1079697 AAAATTCAGAAGGAATCGACGCTTCATCTGGTGCTTCGACTTCGTGGGGG 1079746 >seq1776 Length=5111350 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | |||||||||||||| || |||| ||| | Sbjct 1204178 ATGCAAATCTTTGTTAAGACTCTTACCGGCAAAACCATAACTCTCGAGGTTGAGAGTTCT 1204237 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || ||||||| || || || || | ||| || || Sbjct 1204238 GACACAATCGACAATGTTAAGACGAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCAG 1204297 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | ||| || || ||||||||||||| ||||||| | || || ||||| Sbjct 1204298 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCAGAACACTCGCTGACTACAAT 1204357 Query 110453 ATTCAAAAAGAATCTAC 110469 ||||| |||||||| || Sbjct 1204358 ATTCAGAAAGAATCGAC 1204374 >seq607 Length=2562756 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 |||||||| ||||| || || | || || |||||||| ||| | ||| || || | Sbjct 507706 ATGCAAATCTTTGTTAAGACGCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 507765 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||||| || || || ||| | || || || Sbjct 507766 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 507824 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || |||| | ||| || || ||||||||||||| ||| || |||| |||||||| Sbjct 507825 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 507884 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| ||||| || ||||| |||| Sbjct 507885 CATCCAAAAGGAATCAACCCTGCACTTGGT 507914 >seq374 Length=4160932 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || || ||||| || ||||||||| | || ||| | Sbjct 3965971 ATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTCG 3966030 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| |||||| | ||| || || Sbjct 3966031 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAG 3966090 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| || || |||||||| |||| || || | |||||||||||| Sbjct 3966091 CAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAAC 3966150 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| || || || | ||| ||||| | || || | || |||| Sbjct 3966151 ATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGAA 3966199 >seq530 Length=4616287 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || ||||| || || ||||| || ||||| ||| |||| ||| Sbjct 1166065 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTCGAGGTTGAGAGCTC 1166006 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| | | || || ||||||| ||||| |||||| | ||| || || Sbjct 1166005 GGACACCATCGACAATGTTAAGGCGAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCA 1165946 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || | |||| ||| || || ||||| ||||||| || || | ||||||||||| Sbjct 1165945 GCAGAGGTTGATTTTTGCCGGGAAGCAGCTTGAGGATGGAAGGACTCTTGCGGATTACAA 1165886 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| || || || | ||| ||||| | || || | || |||| Sbjct 1165885 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGGAA 1165836 >seq2164 Length=10083965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCC 110328 |||||||| || || || ||||| |||| || |||||||| ||| | ||| || | || Sbjct 642412 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATCC 642471 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 | || || ||| | | || ||| ||||| |||||||||||| | || || Sbjct 642472 TCG-GACACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 642530 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 |||||| | || || | || || |||||||| || |||| | | || | || ||||| Sbjct 642531 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGATTA 642590 Query 110449 CAACATTCAAAAAGAATCTAC 110469 ||||||||| || ||||| || Sbjct 642591 CAACATTCAGAAGGAATCCAC 642611 >seq863 Length=2839217 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGA--GC-C 110328 ||||||||| ||||| || ||||| || || ||||| |||||| | || || || | Sbjct 2111637 AATGCAAATCTTTGTAAAGACTTTGACAGGAAAAACAATTACCTTGGAGGTTGAAAGCTC 2111696 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| ||||||| | | || || |||||| ||||||||||| | ||| ||| Sbjct 2111697 TGAC---ACTGTCGACAATGTTAAGACCAAGATTCAGGACAAAGAAGGAATCCCCCCGGA 2111753 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || | || | ||| || || ||||| ||||||| | || | || ||||| Sbjct 2111754 TCAGCAGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGACGTACTCTTGCTGATTA 2111813 Query 110449 CAACATTCAAAAAGAATCTAC 110469 |||||| || || || || || Sbjct 2111814 CAACATCCAGAAGGAGTCAAC 2111834 >seq3251 Length=7052893 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| || || || || ||| | || || |||||||| ||| | ||| || || | Sbjct 3480709 ATGCAGATTTTCGTTAAGACTCTTACTGGGAAAACCATCACCCTAGAAGTTGAAAGCTCA 3480650 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||||| | | | | || || ||||||| || || || ||| | || || || Sbjct 3480649 -GATACAATTGACAATGTGAAGACGAAGATTCAAGATAAGGAGGGCATTCCACCTGACCA 3480591 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || |||| | ||| || || ||||||||||||| ||| || |||| |||||||| Sbjct 3480590 GCAGAGGATTATCTTTGCTGGGAAGCAGCTGGAGGATGGCAGGACTTTGGCTGATTACAA 3480531 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| ||||| || ||||| |||| Sbjct 3480530 CATCCAAAAGGAATCAACCCTGCACTTGGT 3480501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412824060166598