Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq2087 98.7 2e-14 seq1371 89.7 8e-12 >seq2087 Length=2955978 Score = 98.7 bits (108), Expect = 2e-14 Identities = 159/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 |||||| || || | | ||| || || || ||||| || | || |||||||||||||| Sbjct 718719 ATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCAT 718778 Query 793967 CCACGGGAACGGGTTG-GCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 ||| ||| ||||| | || | || ||| ||||||||||||| || | ||| | Sbjct 718779 CCAATCGAATGGGTTCTGAACTCCG-TAAACCTTTTCGCACCCGAGCGCAGCCAACAGTC 718837 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 ||| || || || ||||||||||| | ||| || | |||||| || | ||| || Sbjct 718838 TGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCA 718897 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | || |||| || | || |||||| |||||| ||||| || || Sbjct 718898 CCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATC 718943 >seq1371 Length=8752182 Score = 89.7 bits (98), Expect = 8e-12 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 793907 ATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 793966 |||||| || || | | ||| || || || ||||| || | || |||||||||||||| Sbjct 1699898 ATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCAT 1699957 Query 793967 CCACGGGAACGGGTTG-GCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 ||| ||||||||| | || | || ||| || ||||| || | || | ||| | Sbjct 1699958 CCAATCGAACGGGTTCTGAACTCCG-TAAACCTTTTCACACCCAAGTGCAGCCAACAGCC 1700016 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCA 794085 || || || || ||||||||||| | ||| || | |||||| || | ||| || Sbjct 1700017 TATCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCA 1700076 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTC 794131 | || |||| ||| | || |||||| |||||| ||||| || || Sbjct 1700077 CCGGAAGCGCATCGGTTACGAACTCTCGCTCGATTTCGACTGCATC 1700122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915875578280354