Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq1717 113 7e-20 seq3320 100 4e-16 seq1776 87.8 3e-12 seq2417 86.0 1e-11 seq863 84.2 3e-11 >seq1717 Length=9716283 Score = 113 bits (124), Expect = 7e-20 Identities = 152/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| |||||||| || || | || || ||| ||| | Sbjct 1668745 TGCAGATTTTCGTGAAAACCCTAACTGGAAAAACCATAACCTTAGAGGTCGAATCATC-C 1668687 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| |||| || || ||| ||||||||||| ||||| |||||| Sbjct 1668686 GACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 1668627 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| || |||||||| || ||| ||||| | ||||||| || Sbjct 1668626 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAAC 1668567 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGT 146239 || || || |||||||| | ||||| || Sbjct 1668566 ATTCAGAAGGAATCGACGCTTCATTTGGT 1668538 >seq3320 Length=4692610 Score = 100 bits (110), Expect = 4e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 |||| || ||| | ||||| |||| || ||||| || || | || || ||| ||| Sbjct 1079521 TGCAGATTTTCGTGAAAACCCTAACTGGGAAAACCATAACCCTAGAAGTCGAATCATCG- 1079579 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| |||| || || ||| ||||||||||| ||||| |||||| Sbjct 1079580 GACACAATCGACAATGTCAAAACCAAGATCCAAGACAAAGAAGGCATCCCACCAGATCAA 1079639 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||| | | || ||||| || |||||||| || ||| ||||| | ||||||| || Sbjct 1079640 CAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTACAAA 1079699 Query 146211 ATACAAAAAGAATCGAC 146227 || || || |||||||| Sbjct 1079700 ATTCAGAAGGAATCGAC 1079716 >seq1776 Length=5111350 Score = 87.8 bits (96), Expect = 3e-12 Identities = 162/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| | || || || || || || || || ||| | || || || | | Sbjct 1205091 TGCAAATATTCGTCAAGACTTTGACTGGGAAGACGATCACTTTGGAGGTCGAGAGTTCAG 1205150 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || ||| ||| || |||||||| || ||||| | Sbjct 1205151 ACACCATTGACAATGTCAAGGCAAAGATTCAAGATAAGGAGGGCATTCCCCCAGATCAGC 1205210 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| | || |||||||| || || | || ||| || || | | || || |||| Sbjct 1205211 AAAGGTTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCTGACTACAATA 1205270 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | ||||| || || || | || || || | || ||||||||||| | ||||||| Sbjct 1205271 TCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAATGCAAATATT 1205328 >seq2417 Length=2538752 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGA-ACATAAC 146090 ||||||| ||| | || || || || || ||||| || ||| | || || || | | | Sbjct 2310190 TGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTCA- 2310248 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || | ||||| || ||| || || ||| || |||||||| || ||||| Sbjct 2310249 GACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCAG 2310308 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | || |||||||| || || | || ||| || || | |||| || || Sbjct 2310309 CAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAAC 2310368 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 || ||||| || || || | || || || | || ||||||||||| | ||||||| Sbjct 2310369 ATCCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGGAATGCAAATATT 2310427 >seq863 Length=2839217 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| |||||||| || || |||||| | || || || || Sbjct 2112095 TGCAAATTTTTGTGAAAACTTTAACAGGGAAGACTATTACTTTGGAGGTTGAGAGCTCCG 2112154 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| || | ||||| ||| || || || || || || ||||| | Sbjct 2112155 ACACTATTGACAATGTTAAGACCAAAATTCAAGACAAGGAGGGAATCCCCCCAGATCAGC 2112214 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || || | || ||| | || | | ||||| |||| Sbjct 2112215 AGAGGTTGATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGTACTCTTGCTGATTACAATA 2112274 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || || || || || ||||| | || | ||||||||||| || Sbjct 2112275 TCCAGAAGGAGTCAACCCTCCATCTTGTTCTCCGATTAAGAGGTGG 2112320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786132142799120