Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq3481 91.5 5e-14 seq3320 91.5 5e-14 seq2094 91.5 5e-14 seq1897 82.4 3e-11 >seq3481 Length=11062796 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 9955784 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 9955843 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 9955844 TGCTCTACCCCGC 9955856 >seq3320 Length=4692610 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 2040211 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 2040152 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 2040151 TGCTCTACCCCGC 2040139 >seq2094 Length=1489424 Score = 91.5 bits (100), Expect = 5e-14 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 |||||||| | ||||||||||||| | |||| ||| ||||||||| |||||||||| ||| Sbjct 270306 TTGCGGAGACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCTACCAAAC 270365 Query 50171 TGCTCTACTCCGC 50183 |||||||| |||| Sbjct 270366 TGCTCTACCCCGC 270378 >seq1897 Length=1557531 Score = 82.4 bits (90), Expect = 3e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 50111 TTGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAAC 50170 ||||||| | ||||||||||||| | |||| ||| ||||||||| |||||| ||| ||| Sbjct 572161 TTGCGGAAACAGGATTTGAACCCGTGACCTCAAGGTTATGAGCCTTGCGAGCCACCAAAC 572220 Query 50171 TGCTCTACTCCGCAT 50185 |||||||| ||||| Sbjct 572221 TGCTCTACCACGCAT 572235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181595682308532