Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1371 91.5 3e-13 seq3245 86.0 1e-11 seq2299 84.2 5e-11 >seq1371 Length=8752182 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 131796 TTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTAAT--TTTTC 131853 |||| ||||| || || |||||| || |||||| |||| | | | ||| ||| | Sbjct 1700394 TTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGATT---GATGGTGCTG--AATCGTTTGC 1700340 Query 131854 TACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGC 131913 | || | | |||||||||||||||||||| || ||||| || || |||||| | Sbjct 1700339 TGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTC 1700280 Query 131914 TATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATCAATTCAT 131973 ||||| ||||| || |||||||| |||||||| ||| | | || || || | | || Sbjct 1700279 CATCTTCTGGCTCAAAAAGCGTGGGTTGATGCCAGGATTAACCTTCTCGAACGAGCTGAT 1700220 Query 131974 CTCGAGAGATGAAG 131987 ||| |||| |||| Sbjct 1700219 ATCGCGAGACGAAG 1700206 >seq3245 Length=10479801 Score = 86.0 bits (94), Expect = 1e-11 Identities = 135/185 (73%), Gaps = 10/185 (5%) Strand=Plus/Minus Query 305309 CATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCT 305368 ||||||||||| || | || || |||||| | || || || ||||||||||| Sbjct 2510682 CATTTGAATGATGGGGACTTTGTACTTTTCAATCGACAGCCCAGTCTCCATAAAATGTCC 2510623 Query 305369 ATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAGTG 305426 || |||| ||| | | | |||| || || | ||| |||||| || | ||| | || Sbjct 2510622 ATTATGGGTCACAGAAT-AAAG-ATCATGCCCTATTCCACATTTAGACTGAATTT--GT- 2510568 Query 305427 CTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 2510567 CTGTTACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCCTC 2510508 Query 305484 AATCA 305488 | ||| Sbjct 2510507 AGTCA 2510503 >seq2299 Length=7737268 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||||||||| || | || || |||||| | || || || |||||||||| Sbjct 2551406 GACATTTGAATGATGGGGACTTTGTACTTTTCAATCGACAGCCCAGTCTCCATAAAATGT 2551347 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTG-ACATTTCGATTAAATGTAAG 305424 | || |||| ||| | | |||| || || | ||| |||||| |||| || | | Sbjct 2551346 CCATTATGGGTCACCGAAT-AAAG-ATCATGCCCTATTCTACATTTAGATTGAACTT--G 2551291 Query 305425 TGCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 | || |||| ||||| ||||| ||||||||||| ||||||||||| |||||||| || Sbjct 2551290 T-CTGTTACGTCACCTTACAATGCTGATTTTGATGGTGATGAAATGAACATGCATGTTCC 2551232 Query 305482 TCAATC 305487 ||| || Sbjct 2551231 TCAGTC 2551226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186759791748046