Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2618 93.3 4e-14 seq2164 89.7 5e-13 seq896 89.7 5e-13 seq863 84.2 2e-11 >seq2618 Length=3490594 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | || || ||||||||||||||| |||| Sbjct 3445162 GACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCG 3445221 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| ||||| || ||||||||||| || || || ||| | Sbjct 3445222 AAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACA 3445281 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | || || || | || | |||||||| || || ||||| Sbjct 3445282 TTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 3445341 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 3445342 ACGAAGATCTGCAT 3445355 >seq2164 Length=10083965 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||||||||| ||| | || || ||||||||||||||| |||| Sbjct 642608 GATTCCTTCTGAATGTTGTAATCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCG 642549 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| ||||| ||||| ||||| || ||||||||||| || || || ||| | Sbjct 642548 AAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACA 642489 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | || ||||| | || | |||||||| || || ||||| Sbjct 642488 TTGTCGATGGTGTCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 642429 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 642428 ACGAAGATCTGCAT 642415 >seq896 Length=2616551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| | || || ||||||||||||||| |||| Sbjct 1343342 GACTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCG 1343283 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || || ||||| || || || ||||||||||| || || || ||||| Sbjct 1343282 AAGATGAGGCGTTGTTGGTCGGGTGGGATGCCTTCTTTGTCTTGGATCTTGGCTTTCACA 1343223 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | | || ||||| | || | |||||||| || || ||||| Sbjct 1343222 TTGTCGATTGTGTCAGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTTC 1343163 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1343162 ACGAAGATCTGCAT 1343149 >seq863 Length=2839217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||||| || | | ||||| || || ||||| ||||| | ||| Sbjct 2111631 ACGAAGGCGAAGCACCAAGTGGAGAGTAGACTCCTTCTGGATGTTATAGTCTGCAAGGGT 2111572 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| ||||||| |||||| | | |||| |||||||| |||||||| || || || Sbjct 2111571 TCGGCCATCCTCGAGCTATTTACCAGCAAAGATCAGACGCTGCTGATCTGGGGGAATTCC 2111512 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||||||||| | | |||| || | ||| | || | ||||| | ||| || || | Sbjct 2111511 TTCTTTATC-TTGAATTTTGGTCTTAACATTATCAATCGTATCAGAACTCTCGACCTCAA 2111453 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | | || ||||| || ||||| | ||||| ||||| Sbjct 2111452 GAGTTATGGACTTGCCAGTTAGGGTTTTGACAAAAATTTGCAT 2111410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476590431666960