Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq530 93.3 4e-14 seq374 86.0 6e-12 >seq530 Length=4616287 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| ||||| ||||| | ||||| ||||||||||| | | Sbjct 1166748 ATGCAGATTTTTGTCAAAACCTTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTCC 1166689 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| || || || || || || || || ||| Sbjct 1166688 GACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAAGGAATCCCCCCAGACCAG 1166629 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || ||| || || ||||| |||| ||| || ||| ||||| Sbjct 1166628 CAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACAAC 1166569 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || || ||||| |||| || ||| | | | || ||||||| Sbjct 1166568 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTCCGTCTTAGGGGAGGAA 1166520 >seq374 Length=4160932 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| ||||| | ||||| ||||||||||| | | Sbjct 3965287 ATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTCGAAAGCTCC 3965346 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || |||||| || || ||||| || || || || ||| Sbjct 3965347 GACACCATTGACAACGTCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCAGACCAG 3965406 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 ||||| || || | || ||| || || ||||| |||| ||| || ||| ||||| Sbjct 3965407 CAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCCGACTACAAC 3965466 Query 25355 ATTCAAAAAGAATCCAC 25371 || ||||| || || || Sbjct 3965467 ATCCAAAAGGAGTCAAC 3965483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445075005011520