Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20quinoa_20[genbank_20GCA_5F001683475.1_202016-07-11] 3,486 sequences; 1,333,398,936 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2087 161 1e-33 >seq2087 Length=2955978 Score = 161 bits (178), Expect = 1e-33 Identities = 358/528 (68%), Gaps = 17/528 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || |||| | || |||||||||||| |||||| | || || || || Sbjct 719581 TGTTCCCAATTGAATACCCACAAATCTGGGAAATGTACAAAAAAG-CTGAAGCTTCATTC 719523 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTC--CACTGGGT----GTCGCTG 1455866 ||||| ||||| || ||||| || ||| | | | || ||||||| ||| | Sbjct 719522 TGGACTGCCGAAGAAGTCGATCTTT-CGCA-AGATGTTCGTCACTGGGAAACCGTCT-TA 719466 Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926 | | |||||| | |||||||||| ||| |||||||||| || |||||| || || Sbjct 719465 ACCTCCGACGAACAGCATTTCATCACCCACATCCTCGCCTTCTT-CGCCGCATCTGACGG 719407 Query 1455927 CATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACG 1455986 ||| || |||||| || ||||| | || |||||||||||||| | | || || || Sbjct 719406 CATAGTTCTCGAGAATCTCGCCGGAAGATTCATGAAAGAGGTCCAGGTTGCTGAAGCTCG 719347 Query 1455987 TTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCT 1456046 || || || ||||| |||||||| |||||||| |||||||||| ||||| || || Sbjct 719346 CGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATTCACTCTGAAATGTACTCTCTTCT 719287 Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 | || || || |||| || | | || ||| || ||||| || || || || Sbjct 719286 TTTAGAAACTTATATCAAAGATTCTAACCTTAAAACCCATCTTTTTCGTGCAATTGAAAC 719227 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 | || | || | ||| ||||| || ||||| | ||||| | || || Sbjct 719226 TATCCCTTGTGTTAAGAAGAAGGCTGATTGGGCTCTTCGTTGGAT-----TGATGGTGCT 719172 Query 1456167 CGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 | ||||| ||| || | | | ||||| | || || || || || ||||| || Sbjct 719171 GAATCGTTTGCTGAGAGGTTAATTGCTTTTGCTTGTGTTGAAGGGATTTTCTTCTCCGGG 719112 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 ||||| ||| ||||||| ||||| || ||||| || || ||||| ||| Sbjct 719111 AGTTTTTGCTCCATCTTCTGGCTTAAAAAGCGTGGGCTAATGCCGGGT 719064 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 1456532 GAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCGCTCATCGGC 1456591 || || ||||| |||||| |||||| || | || |||| |||||| ||| | || Sbjct 718943 GATGCAGTCGATATCGAGCGAGAGTTCGTAACTGATGCGCTTCCGGTGAAGCTGGTTGGG 718884 Query 1456592 ATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCCTGCTCGCG 1456650 |||||| | | ||| ||| | ||||||||||| ||| || || ||| | ||| | || Sbjct 718883 ATGAACTGTGA--GCTGATGAGTCAGTACATTGAGTTT-GTTGCAGACAGACTGTTGGCT 718827 Query 1456651 GCGCTCGGCTGCGGAGAAGCACTACCGGACGGCC-AACCCGTTCCCATGGATGGAGTTGA 1456709 |||||||| |||| | ||| ||| ||| | ||||| ||| ||||||||||||| Sbjct 718826 GCGCTCGGGTGCGAA-AAGGTTTAC-GGAGTTCAGAACCCATTCGATTGGATGGAGTTGA 718769 Query 1456710 TCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||| || | || ||||| || || || ||| Sbjct 718768 TCTCTCTTCAAGGGAAGACTAATTTCTTTGAG 718737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177474968892732